Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K5706_RS02870 Genome accession   NZ_AP019849
Coordinates   586221..587444 (-) Length   407 a.a.
NCBI ID   WP_221070946.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain 04Ya249     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 581221..592444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5706_RS02830 (VA249_04750) rpsP 581423..581671 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  K5706_RS02835 (VA249_04760) rimM 581699..582247 (+) 549 WP_128810210.1 ribosome maturation factor RimM -
  K5706_RS02840 (VA249_04770) trmD 582275..583018 (+) 744 WP_128810211.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  K5706_RS02845 (VA249_04780) rplS 583060..583413 (+) 354 WP_128810212.1 50S ribosomal protein L19 -
  K5706_RS02850 (VA249_04790) yacG 583646..583840 (-) 195 WP_211915996.1 DNA gyrase inhibitor YacG -
  K5706_RS02855 (VA249_04800) zapD 583904..584644 (-) 741 WP_128810214.1 cell division protein ZapD -
  K5706_RS02860 (VA249_04810) coaE 584672..585286 (-) 615 WP_221068091.1 dephospho-CoA kinase -
  K5706_RS02865 (VA249_04820) pilD 585287..586156 (-) 870 WP_221070944.1 prepilin peptidase Machinery gene
  K5706_RS02870 (VA249_04830) pilC 586221..587444 (-) 1224 WP_221070946.1 type II secretion system F family protein Machinery gene
  K5706_RS02875 (VA249_04840) pilB 587478..589163 (-) 1686 WP_221070948.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K5706_RS02880 (VA249_04850) pilA 589163..589636 (-) 474 WP_275946047.1 pilin Machinery gene
  K5706_RS02885 (VA249_04860) nadC 589859..590746 (-) 888 WP_221070950.1 carboxylating nicotinate-nucleotide diphosphorylase -
  K5706_RS02890 (VA249_04870) ampD 590839..591396 (+) 558 WP_221070952.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45063.29 Da        Isoelectric Point: 10.2824

>NTDB_id=74392 K5706_RS02870 WP_221070946.1 586221..587444(-) (pilC) [Vibrio alfacsensis strain 04Ya249]
MKNKDLRLNNYIWKGINSSGKKASGHTLALSEFEVRERLAAQHIKVRKLKKRRISLLKKLTQRVKGKDITAFTRQISTML
ITGVPIVQALHLVAESHKKAEMKSILLSVTRAIEAGTPISKAMHNTSKHFDPFYTDLIATGEQSGNLPLVFERLATYREK
SEQLRSKVIKALIYPAMVVFAALAVSYLMLTQVIPEFETMFAGFGAELPLFTQIVLLVSAWTQKWGVYIGLGCISLAITS
RFASQHSQSFRLLIARISIMLPILGPVLSKAAIAKFSRTLSTSFSSGIPILLCLQTTAKTSGNLHYQLAINDIYHDTAAG
MPLYIAMRNSGVFPELVLQMVMIGEESGRLDDMLNKVAAIYEFEVDNTVDNLSKILEPLLIVFLGVVVGSLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=74392 K5706_RS02870 WP_221070946.1 586221..587444(-) (pilC) [Vibrio alfacsensis strain 04Ya249]
ATGAAAAACAAAGACTTACGACTCAACAACTATATCTGGAAAGGCATCAATAGCTCCGGAAAGAAAGCCTCTGGCCATAC
TCTTGCTCTCAGTGAATTCGAAGTTCGTGAACGCTTAGCTGCGCAACACATAAAAGTCAGAAAACTAAAAAAGCGTCGTA
TCTCTTTGCTTAAGAAATTAACCCAGCGTGTAAAAGGTAAAGATATCACAGCTTTTACCCGTCAGATTTCGACCATGCTA
ATAACAGGAGTTCCCATTGTTCAAGCATTACACCTTGTCGCTGAAAGCCATAAAAAAGCAGAAATGAAGTCGATTCTGCT
CAGTGTTACTCGAGCGATAGAAGCCGGAACCCCAATATCAAAAGCCATGCATAACACCAGCAAGCATTTTGATCCATTTT
ATACCGATCTAATCGCCACAGGTGAACAATCGGGTAACTTACCTCTTGTTTTCGAACGTCTCGCCACTTATCGAGAAAAA
AGCGAACAGTTGCGCTCAAAAGTCATCAAAGCCTTAATTTATCCAGCGATGGTCGTATTCGCAGCGCTTGCTGTCTCTTA
TTTGATGTTGACCCAAGTAATTCCGGAATTCGAAACGATGTTTGCAGGCTTTGGCGCAGAGTTACCGCTATTTACTCAGA
TAGTACTATTGGTGTCTGCTTGGACGCAAAAATGGGGAGTGTATATTGGTTTAGGATGCATTAGCTTAGCTATCACTTCA
CGTTTCGCAAGCCAGCACTCTCAATCATTCCGGCTATTGATTGCGCGTATCAGTATAATGCTTCCCATTTTAGGTCCCGT
GTTATCTAAAGCCGCCATTGCTAAATTCAGCCGAACGCTTTCGACGAGCTTCAGTTCAGGGATCCCTATTCTGCTCTGCT
TACAAACCACAGCTAAAACCTCAGGTAACCTTCATTACCAACTCGCAATTAATGACATTTATCACGATACAGCAGCAGGG
ATGCCCTTGTATATTGCCATGCGAAATAGCGGAGTATTTCCTGAATTGGTGCTACAAATGGTGATGATTGGTGAAGAATC
CGGACGCTTGGATGATATGTTAAACAAAGTGGCGGCCATTTATGAGTTTGAAGTCGACAATACCGTCGATAATTTGAGTA
AAATTTTAGAGCCTCTACTCATTGTTTTTCTCGGGGTTGTCGTAGGAAGTCTTGTTACTGCAATGTACCTCCCTATCTTT
AACTTAATGAGCGTATTGGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

78.133

100

0.781
  pilC Vibrio cholerae strain A1552

67.822

99.263

0.673
  pilC Acinetobacter baumannii D1279779

40.15

98.526

0.396
  pilC Acinetobacter baylyi ADP1

40.452

97.789

0.396
  pilG Neisseria meningitidis 44/76-A

39.9

98.526

0.393
  pilG Neisseria gonorrhoeae MS11

39.9

98.526

0.393
  pilC Legionella pneumophila strain ERS1305867

40.506

97.052

0.393
  pilC Pseudomonas stutzeri DSM 10701

38.67

99.754

0.386

Multiple sequence alignment