Detailed information NTG0074391

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: K5706_RS02865
• Genome accession: NZ_AP019849
• Coordinates: 585287..586156 (-)
• Length: 289 a.a.
• NCBI ID: WP_221070944.1
• Uniprot ID: -
• Organism: Vibrio alfacsensis strain 04Ya249
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 580287..591156

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K5706_RS02830 (VA249_04750)	rpsP	581423..581671 (+)	249	WP_004410028.1	30S ribosomal protein S16	-
K5706_RS02835 (VA249_04760)	rimM	581699..582247 (+)	549	WP_128810210.1	ribosome maturation factor RimM	-
K5706_RS02840 (VA249_04770)	trmD	582275..583018 (+)	744	WP_128810211.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
K5706_RS02845 (VA249_04780)	rplS	583060..583413 (+)	354	WP_128810212.1	50S ribosomal protein L19	-
K5706_RS02850 (VA249_04790)	yacG	583646..583840 (-)	195	WP_211915996.1	DNA gyrase inhibitor YacG	-
K5706_RS02855 (VA249_04800)	zapD	583904..584644 (-)	741	WP_128810214.1	cell division protein ZapD	-
K5706_RS02860 (VA249_04810)	coaE	584672..585286 (-)	615	WP_221068091.1	dephospho-CoA kinase	-
K5706_RS02865 (VA249_04820)	pilD	585287..586156 (-)	870	WP_221070944.1	prepilin peptidase	Machinery gene
K5706_RS02870 (VA249_04830)	pilC	586221..587444 (-)	1224	WP_221070946.1	type II secretion system F family protein	Machinery gene
K5706_RS02875 (VA249_04840)	pilB	587478..589163 (-)	1686	WP_221070948.1	type IV-A pilus assembly ATPase PilB	Machinery gene
K5706_RS02880 (VA249_04850)	pilA	589163..589636 (-)	474	WP_275946047.1	pilin	Machinery gene
K5706_RS02885 (VA249_04860)	nadC	589859..590746 (-)	888	WP_221070950.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32512.77 Da
• Isoelectric Point: 7.0190

>NTDB_id=74391 K5706_RS02865 WP_221070944.1 585287..586156(-) (pilD) [Vibrio alfacsensis strain 04Ya249]
MEVFLYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMEIEWRHECAESFPEYKIEPPKEKLTLSIPRSSCQQCGTPIRVR
DNIPVISWLLLKGKCHNCQSSISVRYPLIELITALCSGFLAFYFGFSYFTIALIFFTFVLIAATFIDLDTMLLPDQLTLP
LMWSGIALALTGISPISLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGEQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=74391 K5706_RS02865 WP_221070944.1 585287..586156(-) (pilD) [Vibrio alfacsensis strain 04Ya249]
ATGGAAGTATTCCTGTACTACCCATGGCTATTCGTTGTATTTGCCACAATTTTCGGTTTAATCGTGGGAAGTTTCCTCAA
CGTTGTTATTTATCGCCTACCAAAAATCATGGAAATCGAATGGCGACACGAGTGTGCGGAATCTTTTCCTGAATACAAAA
TAGAACCACCAAAAGAGAAGCTGACTCTTAGTATTCCACGCTCTTCTTGTCAACAATGCGGCACGCCTATTCGTGTTCGA
GACAACATTCCCGTGATTAGCTGGTTATTATTGAAAGGAAAATGCCACAACTGCCAATCTTCGATTAGTGTTCGCTACCC
TCTCATTGAACTTATCACCGCGCTCTGTTCGGGTTTTCTCGCGTTTTACTTCGGTTTTAGCTACTTCACCATCGCATTAA
TTTTCTTTACCTTTGTACTCATTGCCGCCACATTTATCGATCTTGATACCATGTTGCTGCCAGATCAACTGACCTTACCT
TTAATGTGGTCAGGCATTGCGCTTGCGCTCACTGGTATTAGTCCTATTAGTTTGCAAGATGCCGTCATTGGTGCGATCGC
CGGCTACCTCTGCCTTTGGAGTGTCTATTGGGGGTTCAAACTCCTAACAGGTAAAGAGGGAATGGGATATGGTGATTTCA
AGTTACTCGCCGCGTTAGGAGCTTGGTTAGGTTGGCAATCACTCCCAATGATCATTTTGCTTTCATCGGTTGTCGGCATC
ATTTTTGGTCTTATTCAATTACGTTTGCAAAAACAAGGTATCGAAAAAGCTTTTCCATTCGGCCCATACCTAGCAATAGC
AGGTTGGGTAAGCCTAATTTGGGGTGAACAAATTCTAAACTGGTACTTTACGTCAATTTTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-123)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	90.657	100	0.907
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.03	93.772	0.488
pilD	Acinetobacter nosocomialis M2	52.03	93.772	0.488
pilD	Neisseria gonorrhoeae MS11	45.652	95.502	0.436