Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   VroAM7_RS13420 Genome accession   NZ_AP019798
Coordinates   2881879..2883102 (+) Length   407 a.a.
NCBI ID   WP_143692960.1    Uniprot ID   -
Organism   Vibrio rotiferianus strain AM7     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2876879..2888102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VroAM7_RS13400 (VroAM7_25250) ampD 2877968..2878519 (-) 552 WP_038885735.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  VroAM7_RS13405 (VroAM7_25260) nadC 2878612..2879499 (+) 888 WP_088880393.1 carboxylating nicotinate-nucleotide diphosphorylase -
  VroAM7_RS13410 (VroAM7_25270) pilA 2879727..2880176 (+) 450 WP_088880392.1 pilin Machinery gene
  VroAM7_RS13415 (VroAM7_25280) pilB 2880180..2881865 (+) 1686 WP_143692959.1 type IV-A pilus assembly ATPase PilB Machinery gene
  VroAM7_RS13420 (VroAM7_25290) pilC 2881879..2883102 (+) 1224 WP_143692960.1 type II secretion system F family protein Machinery gene
  VroAM7_RS13425 (VroAM7_25300) pilD 2883173..2884042 (+) 870 WP_143692961.1 prepilin peptidase Machinery gene
  VroAM7_RS13430 (VroAM7_25310) coaE 2884043..2884657 (+) 615 WP_143692962.1 dephospho-CoA kinase -
  VroAM7_RS13435 (VroAM7_25320) zapD 2884686..2885426 (+) 741 WP_143692963.1 cell division protein ZapD -
  VroAM7_RS13440 (VroAM7_25330) yacG 2885490..2885684 (+) 195 WP_010450195.1 DNA gyrase inhibitor YacG -
  VroAM7_RS13445 (VroAM7_25340) rplS 2886260..2886613 (-) 354 WP_005379971.1 50S ribosomal protein L19 -
  VroAM7_RS13450 (VroAM7_25350) trmD 2886655..2887398 (-) 744 WP_010450200.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  VroAM7_RS13455 (VroAM7_25360) rimM 2887426..2887974 (-) 549 WP_005438038.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45105.41 Da        Isoelectric Point: 10.4723

>NTDB_id=74129 VroAM7_RS13420 WP_143692960.1 2881879..2883102(+) (pilC) [Vibrio rotiferianus strain AM7]
MKTKQPNLRNFRWKGINSSGKQTSGQLLALTEQEVRERLKAQHIKIRKLKKSNISLATKLSHKVKAKDITIFTRQIATML
ATGVPIVPALKLVSENHRKAEMKSVLISISKAVEAGTPISKAMHLASHHFDPLYTDLISTGEQSGNLSQVFERLATYREK
SEQLKAKVIKALIYPVMVIFVALAVSYLMLTQVIPEFEKMFVGFGADLPWFTKQVLNLSSWMQIWGPFILSGCIAVVLSS
RFLAKRSDSFRLVLAKNVLKLPVLGGVLSKAAIAKFSRTLATSFSSGIPILTSLKTTSKTSGNLHYQLAIEEVYRNTAAG
MPVYIAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=74129 VroAM7_RS13420 WP_143692960.1 2881879..2883102(+) (pilC) [Vibrio rotiferianus strain AM7]
ATGAAAACCAAACAACCGAATCTTAGAAACTTTCGTTGGAAAGGCATCAACAGCTCTGGAAAGCAAACATCAGGTCAACT
TCTTGCTTTAACAGAACAAGAAGTTAGAGAGCGCTTGAAAGCACAACATATTAAAATCAGAAAGCTAAAGAAATCTAATA
TTTCCTTGGCTACCAAGCTTAGTCATAAAGTCAAAGCAAAGGACATCACCATTTTCACTCGGCAAATCGCAACAATGCTC
GCGACTGGTGTTCCTATTGTTCCGGCATTAAAACTGGTTTCGGAAAACCACCGTAAAGCAGAGATGAAATCCGTTCTTAT
CAGTATTAGCAAAGCCGTTGAAGCAGGAACGCCAATATCCAAAGCCATGCACCTTGCAAGCCATCACTTTGATCCGCTTT
ATACTGACCTAATATCCACAGGAGAACAATCTGGTAACTTATCGCAGGTTTTTGAACGCCTAGCCACTTACCGAGAAAAA
AGCGAACAACTAAAAGCGAAAGTGATTAAAGCACTTATCTACCCTGTAATGGTTATCTTCGTTGCTCTCGCAGTTTCATA
CCTGATGCTGACCCAGGTTATTCCTGAATTTGAAAAAATGTTTGTTGGGTTCGGAGCCGATCTCCCTTGGTTCACCAAAC
AAGTCCTTAACTTATCCTCATGGATGCAAATTTGGGGGCCTTTTATACTATCAGGCTGCATAGCCGTCGTTCTATCCAGT
CGTTTTTTAGCTAAACGTTCTGATTCGTTTCGGTTAGTCCTCGCAAAAAATGTTCTCAAACTACCAGTCTTAGGTGGGGT
CTTATCTAAAGCCGCTATAGCAAAGTTTAGCCGAACCCTTGCCACCAGTTTTAGTTCAGGGATACCAATACTCACTAGCT
TAAAAACCACTTCGAAAACATCGGGGAACTTACACTACCAACTCGCGATAGAAGAGGTTTATCGCAATACTGCAGCAGGG
ATGCCTGTTTATATCGCGATGCGAAATTGCAATGTGTTTCCTGAATTAGTTTTGCAAATGGTTATGATTGGAGAAGAATC
CGGTCGCTTGGACGATATGCTCAATAAAGTCGCTACTATTTACGAGTTTGAGGTCGACAATACAGTCGATAACTTAAGTA
AGATCCTAGAGCCCTTAATTATTGTTTTTCTTGGTGTTGTCGTTGGAGGTTTAGTCACAGCAATGTACTTACCAATCTTT
AACTTGATGAGCGTATTGGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

80.835

100

0.808
  pilC Vibrio cholerae strain A1552

72

98.28

0.708
  pilC Acinetobacter baylyi ADP1

43.89

98.526

0.432
  pilC Acinetobacter baumannii D1279779

43.392

98.526

0.428
  pilC Legionella pneumophila strain ERS1305867

40.786

100

0.408
  pilC Pseudomonas stutzeri DSM 10701

39.356

99.263

0.391
  pilG Neisseria meningitidis 44/76-A

37.811

98.771

0.373
  pilG Neisseria gonorrhoeae MS11

37.594

98.034

0.369

Multiple sequence alignment