Detailed information NTG0074130

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: VroAM7_RS13425
• Genome accession: NZ_AP019798
• Coordinates: 2883173..2884042 (+)
• Length: 289 a.a.
• NCBI ID: WP_143692961.1
• Uniprot ID: -
• Organism: Vibrio rotiferianus strain AM7
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2878173..2889042

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VroAM7_RS13405 (VroAM7_25260)	nadC	2878612..2879499 (+)	888	WP_088880393.1	carboxylating nicotinate-nucleotide diphosphorylase	-
VroAM7_RS13410 (VroAM7_25270)	pilA	2879727..2880176 (+)	450	WP_088880392.1	pilin	Machinery gene
VroAM7_RS13415 (VroAM7_25280)	pilB	2880180..2881865 (+)	1686	WP_143692959.1	type IV-A pilus assembly ATPase PilB	Machinery gene
VroAM7_RS13420 (VroAM7_25290)	pilC	2881879..2883102 (+)	1224	WP_143692960.1	type II secretion system F family protein	Machinery gene
VroAM7_RS13425 (VroAM7_25300)	pilD	2883173..2884042 (+)	870	WP_143692961.1	prepilin peptidase	Machinery gene
VroAM7_RS13430 (VroAM7_25310)	coaE	2884043..2884657 (+)	615	WP_143692962.1	dephospho-CoA kinase	-
VroAM7_RS13435 (VroAM7_25320)	zapD	2884686..2885426 (+)	741	WP_143692963.1	cell division protein ZapD	-
VroAM7_RS13440 (VroAM7_25330)	yacG	2885490..2885684 (+)	195	WP_010450195.1	DNA gyrase inhibitor YacG	-
VroAM7_RS13445 (VroAM7_25340)	rplS	2886260..2886613 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
VroAM7_RS13450 (VroAM7_25350)	trmD	2886655..2887398 (-)	744	WP_010450200.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
VroAM7_RS13455 (VroAM7_25360)	rimM	2887426..2887974 (-)	549	WP_005438038.1	ribosome maturation factor RimM	-
VroAM7_RS13460 (VroAM7_25370)	rpsP	2888004..2888252 (-)	249	WP_004410028.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32512.63 Da
• Isoelectric Point: 7.5424

>NTDB_id=74130 VroAM7_RS13425 WP_143692961.1 2883173..2884042(+) (pilD) [Vibrio rotiferianus strain AM7]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTHIRIR
DNIPVISWLLLRGKCHNCQSSISARYPLVELLTAFCSGFIAFHFGFSYFTAALIFFTFVLIAATFIDLDTMLLPDQLTLP
LMWTGIALALVGISPVSLQDAVIGAMAGYLCLWSVYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=74130 VroAM7_RS13425 WP_143692961.1 2883173..2884042(+) (pilD) [Vibrio rotiferianus strain AM7]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTGCCACGATTTTTGGTTTGATCGTAGGCAGCTTCCTCAA
CGTTGTTATTTATCGACTACCCAAAATCATGGAACTAGAATGGCGACGCGAGTGCGCTGAGTCATTTCCTGAATACAAGA
TCGAGCCACCAAAAGAGACGTTAACGCTAAGTGTGCCGCGTTCATCTTGTCAGCAATGTGGTACACACATCCGCATCAGA
GACAACATCCCTGTGATTAGTTGGCTATTACTCAGAGGTAAATGCCACAACTGCCAGTCTTCTATTAGTGCTCGCTACCC
TCTTGTCGAACTGCTTACTGCGTTTTGTTCGGGTTTTATCGCCTTTCATTTCGGTTTTAGCTACTTCACTGCGGCCCTTA
TTTTCTTTACCTTTGTACTGATAGCCGCCACATTCATCGACCTAGATACTATGTTGTTGCCGGATCAACTCACGCTGCCA
TTAATGTGGACCGGTATTGCCCTTGCTCTCGTGGGTATAAGCCCTGTTAGCCTGCAAGACGCCGTTATTGGAGCTATGGC
GGGTTACCTCTGCCTCTGGAGTGTCTACTGGGCATTCAAACTGCTAACTGGCAAAGAAGGTATGGGTTACGGTGATTTTA
AACTACTTGCAGCATTAGGAGCTTGGTTAGGTTGGCAATCTTTGCCGATGATCATTTTGCTTTCATCAGTGGTAGGCGTC
ATCTTTGGTCTTATTCAATTGCGTTTGCAGAAGCAAGGCATCGAAAAAGCCTTTCCTTTTGGTCCTTACCTTGCAATCGC
GGGGTGGGTAAGCCTAATTTGGGGCAATCAAATCCTTAACTGGTACTTTACGTCAATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	95.848	100	0.958
pilD	Vibrio cholerae strain A1552	74.653	99.654	0.744
pilD	Acinetobacter baumannii D1279779	51.825	94.81	0.491
pilD	Acinetobacter nosocomialis M2	51.46	94.81	0.488
pilD	Neisseria gonorrhoeae MS11	46.377	95.502	0.443