Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | jpw_RS03315 | Genome accession | NZ_CP107576 |
| Coordinates | 715245..715655 (+) | Length | 136 a.a. |
| NCBI ID | WP_047934243.1 | Uniprot ID | - |
| Organism | Pseudomonas asiatica strain JP233 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 710245..720655
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| jpw_RS03285 (jpw_03285) | - | 710668..711099 (-) | 432 | WP_015268860.1 | hypothetical protein | - |
| jpw_RS03290 (jpw_03290) | - | 711186..711893 (+) | 708 | WP_191471990.1 | energy-coupling factor ABC transporter permease | - |
| jpw_RS03295 (jpw_03295) | yacG | 712131..712331 (-) | 201 | WP_003260624.1 | DNA gyrase inhibitor YacG | - |
| jpw_RS03300 (jpw_03300) | coaE | 712328..712951 (-) | 624 | WP_100413056.1 | dephospho-CoA kinase | - |
| jpw_RS03305 (jpw_03305) | pilD | 712951..713817 (-) | 867 | WP_253153134.1 | A24 family peptidase | Machinery gene |
| jpw_RS03310 (jpw_03310) | - | 713820..715028 (-) | 1209 | WP_264209746.1 | type II secretion system F family protein | - |
| jpw_RS03315 (jpw_03315) | pilA | 715245..715655 (+) | 411 | WP_047934243.1 | pilin | Machinery gene |
| jpw_RS03325 (jpw_03325) | - | 717044..717913 (+) | 870 | Protein_632 | integrase | - |
| jpw_RS03335 (jpw_03335) | - | 718627..719478 (+) | 852 | WP_264209747.1 | hypothetical protein | - |
| jpw_RS03340 (jpw_03340) | - | 719475..720416 (+) | 942 | WP_264209748.1 | DUF1848 domain-containing protein | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 13783.04 Da Isoelectric Point: 7.0812
>NTDB_id=740768 jpw_RS03315 WP_047934243.1 715245..715655(+) (pilA) [Pseudomonas asiatica strain JP233]
MKGQRGITLIELMIVVAIIGILATIALPMYTNHQSRSKAAAGLLEISALKTAMDLRLNDGKDVPDVAALGGQPATAHCAI
TASGKAADGTGSIVCTLVDAPANALGKALTLTRSASGWACTTDIEEDLAPKGCKAP
MKGQRGITLIELMIVVAIIGILATIALPMYTNHQSRSKAAAGLLEISALKTAMDLRLNDGKDVPDVAALGGQPATAHCAI
TASGKAADGTGSIVCTLVDAPANALGKALTLTRSASGWACTTDIEEDLAPKGCKAP
Nucleotide
Download Length: 411 bp
>NTDB_id=740768 jpw_RS03315 WP_047934243.1 715245..715655(+) (pilA) [Pseudomonas asiatica strain JP233]
ATGAAAGGGCAACGCGGTATCACCCTGATCGAACTGATGATCGTCGTCGCGATCATCGGCATTCTGGCGACCATCGCCTT
ACCGATGTACACCAACCACCAGTCACGCTCCAAGGCCGCGGCCGGGTTGCTGGAGATCAGCGCGCTGAAGACCGCGATGG
ACCTGCGGTTGAACGACGGGAAGGATGTGCCGGATGTGGCCGCGTTGGGTGGCCAGCCGGCGACGGCGCACTGTGCGATC
ACGGCTAGCGGCAAGGCGGCGGATGGCACTGGGAGCATCGTTTGTACGCTGGTGGATGCGCCGGCCAATGCGCTGGGCAA
GGCATTGACCCTGACGCGTTCGGCTAGCGGGTGGGCGTGTACGACCGACATCGAGGAAGACCTGGCGCCGAAGGGGTGCA
AGGCGCCTTGA
ATGAAAGGGCAACGCGGTATCACCCTGATCGAACTGATGATCGTCGTCGCGATCATCGGCATTCTGGCGACCATCGCCTT
ACCGATGTACACCAACCACCAGTCACGCTCCAAGGCCGCGGCCGGGTTGCTGGAGATCAGCGCGCTGAAGACCGCGATGG
ACCTGCGGTTGAACGACGGGAAGGATGTGCCGGATGTGGCCGCGTTGGGTGGCCAGCCGGCGACGGCGCACTGTGCGATC
ACGGCTAGCGGCAAGGCGGCGGATGGCACTGGGAGCATCGTTTGTACGCTGGTGGATGCGCCGGCCAATGCGCTGGGCAA
GGCATTGACCCTGACGCGTTCGGCTAGCGGGTGGGCGTGTACGACCGACATCGAGGAAGACCTGGCGCCGAAGGGGTGCA
AGGCGCCTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Pseudomonas aeruginosa PAK |
43.137 |
100 |
0.485 |
| pilA | Acinetobacter baumannii strain A118 |
44.604 |
100 |
0.456 |
| pilA/pilA1 | Eikenella corrodens VA1 |
37.58 |
100 |
0.434 |
| comP | Acinetobacter baylyi ADP1 |
39.456 |
100 |
0.426 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.963 |
99.265 |
0.426 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
42.647 |
100 |
0.426 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
37.063 |
100 |
0.39 |
| pilA | Vibrio cholerae strain A1552 |
37.063 |
100 |
0.39 |
| pilA | Vibrio cholerae C6706 |
37.063 |
100 |
0.39 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
38.462 |
95.588 |
0.368 |