Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OEG79_RS17425 Genome accession   NZ_CP107549
Coordinates   3650418..3651635 (+) Length   405 a.a.
NCBI ID   WP_264146201.1    Uniprot ID   -
Organism   Pseudomonas sp. Z8(2022)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3645418..3656635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEG79_RS17400 (OEG79_17400) nadC 3646264..3647112 (+) 849 WP_264146198.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OEG79_RS17405 (OEG79_17405) tfpZ 3647145..3647882 (-) 738 WP_264146199.1 TfpX/TfpZ family type IV pilin accessory protein -
  OEG79_RS17410 (OEG79_17410) - 3647995..3648483 (-) 489 WP_318840823.1 pilin -
  OEG79_RS17420 (OEG79_17420) pilB 3648709..3650415 (+) 1707 WP_264146200.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OEG79_RS17425 (OEG79_17425) pilC 3650418..3651635 (+) 1218 WP_264146201.1 type II secretion system F family protein Machinery gene
  OEG79_RS17430 (OEG79_17430) pilD 3651636..3652505 (+) 870 WP_264146202.1 prepilin peptidase Machinery gene
  OEG79_RS17435 (OEG79_17435) coaE 3652674..3653282 (+) 609 WP_264146203.1 dephospho-CoA kinase -
  OEG79_RS17440 (OEG79_17440) yacG 3653279..3653473 (+) 195 WP_264146204.1 DNA gyrase inhibitor YacG -
  OEG79_RS17445 (OEG79_17445) - 3653510..3653725 (-) 216 WP_264146205.1 hypothetical protein -
  OEG79_RS17450 (OEG79_17450) - 3653831..3654520 (-) 690 WP_264146206.1 energy-coupling factor ABC transporter permease -
  OEG79_RS17455 (OEG79_17455) - 3654720..3655349 (+) 630 WP_264146207.1 DUF1780 domain-containing protein -
  OEG79_RS17460 (OEG79_17460) - 3655346..3655894 (+) 549 WP_264146208.1 MOSC domain-containing protein -
  OEG79_RS17465 (OEG79_17465) - 3655919..3656092 (+) 174 WP_264146209.1 DUF3094 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44081.76 Da        Isoelectric Point: 9.8564

>NTDB_id=740590 OEG79_RS17425 WP_264146201.1 3650418..3651635(+) (pilC) [Pseudomonas sp. Z8(2022)]
MAEKALKTSIFTWEGKNKTGSIVKGEISGQNPSLVKAQLRKQGINPTKVRKKSSLSLGGGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIAEGFDNPNMRKMVDEVKQEVAAGNSFATSLRKKPEYFDELYCNLVESGEQAGALENLLDRIATYKEKT
EALKAKIKKAMNYPIAVVVVAVIVTAILLIKVVPQFEQVFANFGAELPAFTQMVIGISQSLQQWWLVFLIAIFIAAFSFK
EAMKRSQKLRDSVDRGVLKLPIVGDILYKSAVARFARTLSTTFAAGVPLVDALDSVSGATGNVVFKNATNKIKSDVSTGM
QLNFSMRTTGTFPSMAIQMTAIGEESGSLDEMLDKVASFYEAEVDNMVDGLTSLMEPIIMSVLGVLVGGLIIAMYLPIFQ
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=740590 OEG79_RS17425 WP_264146201.1 3650418..3651635(+) (pilC) [Pseudomonas sp. Z8(2022)]
ATGGCCGAAAAAGCTCTAAAAACCAGCATATTCACCTGGGAAGGCAAGAACAAAACCGGCTCCATCGTCAAAGGGGAAAT
CAGCGGGCAAAATCCCTCTCTGGTGAAAGCCCAGTTGCGCAAACAAGGTATCAACCCAACCAAGGTGCGCAAAAAATCCA
GCCTTTCGCTGGGTGGTGGTAAGAAGATCAAACCCATGGATATCGCCCTGTTCACTCGACAGATGGCGACCATGATGAAA
GCCGGGGTGCCGTTGCTACAATCCTTCGACATCATTGCCGAGGGTTTCGACAATCCCAATATGCGAAAAATGGTAGACGA
GGTGAAGCAGGAAGTCGCCGCAGGTAATAGCTTTGCCACCTCGCTGCGCAAGAAACCCGAATACTTTGACGAACTGTACT
GCAACTTGGTTGAATCCGGCGAGCAAGCGGGTGCCTTGGAGAATCTGCTAGACCGGATTGCCACCTATAAAGAAAAGACT
GAGGCACTGAAGGCCAAAATCAAAAAAGCCATGAATTATCCAATTGCGGTTGTAGTAGTTGCGGTTATCGTAACTGCCAT
CCTGCTAATCAAAGTAGTGCCTCAGTTTGAGCAAGTATTCGCAAACTTTGGCGCAGAATTACCTGCATTCACTCAAATGG
TAATTGGAATATCTCAGTCGCTTCAACAGTGGTGGCTGGTATTTCTTATTGCGATATTCATAGCTGCCTTTTCCTTCAAA
GAGGCGATGAAACGGTCGCAGAAATTACGGGACTCGGTAGACCGCGGAGTACTTAAACTCCCTATCGTCGGCGATATTCT
CTACAAATCTGCAGTGGCACGCTTTGCTCGCACGCTATCTACCACCTTCGCTGCTGGCGTACCATTGGTAGATGCACTGG
ACTCGGTTTCCGGTGCCACCGGCAACGTGGTTTTCAAAAACGCCACCAATAAGATTAAGTCTGACGTTTCTACAGGCATG
CAACTCAATTTCTCCATGCGTACTACCGGCACTTTCCCTAGCATGGCCATTCAGATGACAGCAATTGGTGAAGAGTCCGG
CTCTCTGGATGAAATGCTCGACAAGGTTGCCTCTTTCTATGAAGCCGAAGTAGACAATATGGTCGATGGTTTGACTAGCC
TGATGGAGCCTATAATCATGTCCGTATTGGGCGTACTGGTTGGCGGCTTGATCATTGCCATGTACCTGCCGATCTTCCAA
CTGGGCTCCGTGGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

80.988

100

0.81
  pilC Acinetobacter baylyi ADP1

59.606

100

0.598
  pilC Acinetobacter baumannii D1279779

59.506

100

0.595
  pilC Legionella pneumophila strain ERS1305867

53.535

97.778

0.523
  pilG Neisseria gonorrhoeae MS11

45.274

99.259

0.449
  pilG Neisseria meningitidis 44/76-A

45.274

99.259

0.449
  pilC Vibrio cholerae strain A1552

42.222

100

0.422
  pilC Vibrio campbellii strain DS40M4

40.909

97.778

0.4
  pilC Thermus thermophilus HB27

36.228

99.506

0.36