Detailed information NTG0740591

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OEG79_RS17430
• Genome accession: NZ_CP107549
• Coordinates: 3651636..3652505 (+)
• Length: 289 a.a.
• NCBI ID: WP_264146202.1
• Uniprot ID: -
• Organism: Pseudomonas sp. Z8(2022)
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3646636..3657505

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OEG79_RS17405 (OEG79_17405)	tfpZ	3647145..3647882 (-)	738	WP_264146199.1	TfpX/TfpZ family type IV pilin accessory protein	-
OEG79_RS17410 (OEG79_17410)	-	3647995..3648483 (-)	489	WP_318840823.1	pilin	-
OEG79_RS17420 (OEG79_17420)	pilB	3648709..3650415 (+)	1707	WP_264146200.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OEG79_RS17425 (OEG79_17425)	pilC	3650418..3651635 (+)	1218	WP_264146201.1	type II secretion system F family protein	Machinery gene
OEG79_RS17430 (OEG79_17430)	pilD	3651636..3652505 (+)	870	WP_264146202.1	prepilin peptidase	Machinery gene
OEG79_RS17435 (OEG79_17435)	coaE	3652674..3653282 (+)	609	WP_264146203.1	dephospho-CoA kinase	-
OEG79_RS17440 (OEG79_17440)	yacG	3653279..3653473 (+)	195	WP_264146204.1	DNA gyrase inhibitor YacG	-
OEG79_RS17445 (OEG79_17445)	-	3653510..3653725 (-)	216	WP_264146205.1	hypothetical protein	-
OEG79_RS17450 (OEG79_17450)	-	3653831..3654520 (-)	690	WP_264146206.1	energy-coupling factor ABC transporter permease	-
OEG79_RS17455 (OEG79_17455)	-	3654720..3655349 (+)	630	WP_264146207.1	DUF1780 domain-containing protein	-
OEG79_RS17460 (OEG79_17460)	-	3655346..3655894 (+)	549	WP_264146208.1	MOSC domain-containing protein	-
OEG79_RS17465 (OEG79_17465)	-	3655919..3656092 (+)	174	WP_264146209.1	DUF3094 domain-containing protein	-
OEG79_RS17470 (OEG79_17470)	-	3656156..3657457 (+)	1302	WP_264146210.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31894.96 Da
• Isoelectric Point: 7.2161

>NTDB_id=740591 OEG79_RS17430 WP_264146202.1 3651636..3652505(+) (pilD) [Pseudomonas sp. Z8(2022)]
MLVVEFLASHTLAFVLCALLLGLLVGSFLNVVIYRLPLMLQRDWQSQAREVLELPPAPTQQTFNLVLPNSSCPRCGHEIR
PWENIPVISYLFLRGKCSSCKTPISKRYPMVEVACGVISGYVAWHFGFTWQAGAMLLLAWGLLAMSLIDADHQILPDVLV
LPLLWLGLIVNYYGLFTSLEDALWGAIAGYLSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVILLRLRGSDSSTPIPFGPYLAIAGWIALLWGDVITGSYLKFAGF

Nucleotide

• Length: 870 bp

>NTDB_id=740591 OEG79_RS17430 WP_264146202.1 3651636..3652505(+) (pilD) [Pseudomonas sp. Z8(2022)]
ATGCTCGTGGTCGAATTTCTGGCCAGCCACACGCTGGCCTTTGTTTTGTGCGCCCTGTTATTAGGCTTACTTGTAGGCAG
TTTCCTTAACGTTGTCATCTATCGCCTGCCTCTGATGCTCCAGCGCGACTGGCAAAGCCAGGCCCGTGAAGTACTGGAAT
TGCCACCAGCCCCCACCCAACAAACTTTCAACTTAGTCCTACCCAACTCCTCATGCCCTCGCTGCGGCCATGAGATTCGC
CCCTGGGAGAACATCCCGGTTATCAGCTACCTGTTCCTGCGCGGCAAGTGCTCAAGCTGTAAAACGCCGATCAGCAAGCG
CTACCCCATGGTAGAAGTGGCCTGCGGCGTGATTTCCGGCTACGTCGCCTGGCATTTCGGCTTTACCTGGCAGGCGGGTG
CGATGTTGTTGCTGGCCTGGGGGCTGCTGGCGATGAGTCTGATCGATGCCGACCACCAGATCCTGCCGGATGTGCTGGTG
CTGCCGCTGCTATGGCTGGGCTTGATCGTCAACTACTACGGATTGTTCACCAGCCTGGAAGATGCTCTGTGGGGGGCGAT
TGCCGGTTATCTGAGTCTGTGGTCGGTGTACTGGCTGTTCAAGCTAATCACCGGCAAGGAAGGCATGGGTTACGGTGACT
TCAAGCTGCTGGCCATGCTTGGAGCCTGGGGCGGCTGGCAGATACTGCCGCTGACCATTCTGCTGTCGTCGCTGGTCGGC
GCGGTACTCGGTGTGATCCTGCTGCGCCTGCGCGGCAGCGATTCCAGTACGCCAATTCCCTTCGGCCCGTATCTGGCGAT
TGCCGGATGGATCGCATTGCTCTGGGGCGATGTGATTACCGGCAGTTATCTGAAATTCGCCGGTTTTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.65	94.81	0.509
pilD	Vibrio campbellii strain DS40M4	53.114	94.464	0.502
pilD	Acinetobacter baumannii D1279779	50.704	98.27	0.498
pilD	Acinetobacter nosocomialis M2	50.352	98.27	0.495
pilD	Neisseria gonorrhoeae MS11	50.57	91.003	0.46