Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OFO16_RS13680 Genome accession   NZ_CP107282
Coordinates   2959330..2961069 (-) Length   579 a.a.
NCBI ID   WP_263837575.1    Uniprot ID   -
Organism   Vibrio natriegens strain PWH3a     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2954330..2966069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFO16_RS13660 (OFO16_13660) - 2955036..2955875 (-) 840 WP_014233144.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  OFO16_RS13665 (OFO16_13665) - 2955945..2957438 (-) 1494 WP_263837573.1 AAA family ATPase -
  OFO16_RS13670 (OFO16_13670) aroB 2957491..2958591 (-) 1101 WP_263837574.1 3-dehydroquinate synthase -
  OFO16_RS13675 (OFO16_13675) aroK 2958623..2959141 (-) 519 WP_014233147.1 shikimate kinase AroK -
  OFO16_RS13680 (OFO16_13680) pilQ 2959330..2961069 (-) 1740 WP_263837575.1 type IV pilus secretin PilQ Machinery gene
  OFO16_RS13685 (OFO16_13685) pilP 2961154..2961669 (-) 516 WP_263837576.1 pilus assembly protein PilP Machinery gene
  OFO16_RS13690 (OFO16_13690) pilO 2961659..2962252 (-) 594 WP_263837577.1 type 4a pilus biogenesis protein PilO Machinery gene
  OFO16_RS13695 (OFO16_13695) pilN 2962245..2962820 (-) 576 WP_263837578.1 PilN domain-containing protein Machinery gene
  OFO16_RS13700 (OFO16_13700) pilM 2962804..2963820 (-) 1017 WP_263837579.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 63590.39 Da        Isoelectric Point: 4.3767

>NTDB_id=739282 OFO16_RS13680 WP_263837575.1 2959330..2961069(-) (pilQ) [Vibrio natriegens strain PWH3a]
MIMRQGLTRTPRVLTGLLSFWLVILFTPFTLADGGTSNALKSIDFRTNKDKDAVIVVELSSPAAIVDIQRVQEGLSIDLL
NTSVKDEQLYLLDVKDFSTVVDSVEVFRDTSTTRLVTHISEDYSHDYRLAGRYLEITVSKLKSDEKTPDKRILEKEGKLI
SINFQDIPVRNVLQLIADYNQFNLVVSDSVEGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPTDEFDLREKQQ
LEKQQLEEEMGELSSEIIKVNFAKASDIAEMINGEGNISMLSERGSMTTDERTNSLLVRELPENILVIRDIIESLDIPVM
QVQIEARIVTVSEGNMDELGIRWGFSSINGNNTVGGSIENNLATIGLYEGDGEEGEGGSVGIDDFLNVNLAATNPSATSI
AFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATTITFKKAVLSLKVTPQITP
DNRLVLDLSVTQDRPGQVVKTGTGEAVTIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRSY
EKVGKSELLIFVTPKVVIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=739282 OFO16_RS13680 WP_263837575.1 2959330..2961069(-) (pilQ) [Vibrio natriegens strain PWH3a]
ATGATAATGAGACAAGGACTTACACGTACACCAAGGGTGCTCACTGGGCTCTTATCCTTTTGGTTAGTTATACTTTTCAC
CCCTTTTACTTTGGCTGATGGCGGAACGTCTAATGCGTTAAAGAGTATCGACTTTCGCACTAATAAGGACAAGGACGCGG
TAATTGTGGTGGAACTGTCTTCACCGGCTGCGATTGTCGACATCCAGCGAGTTCAGGAAGGGCTGAGCATCGACTTGCTT
AATACCTCGGTGAAAGATGAGCAGTTATACCTCCTTGACGTAAAAGACTTTTCAACGGTAGTGGATAGTGTGGAAGTCTT
TCGTGATACCTCGACGACTCGTTTGGTCACGCACATCAGTGAAGATTACAGCCATGATTACCGTTTAGCAGGGCGCTATT
TGGAAATCACGGTCAGTAAACTCAAGTCTGATGAAAAAACACCAGATAAGAGGATTTTAGAGAAAGAAGGCAAACTGATA
TCGATTAACTTCCAGGATATTCCGGTACGTAACGTCTTACAGCTCATTGCCGACTATAACCAGTTTAACCTAGTGGTATC
AGACTCCGTCGAAGGCAACCTGACACTGCGACTTGATGGTGTCCCTTGGCAGCAGGTTTTGGACATTATTCTGCAAGTAA
AAGGTTTAGATAAACGTGTTGATGGTAATGTCATTCTTGTCGCGCCAACGGATGAGTTTGACCTTCGAGAGAAGCAGCAA
CTAGAGAAGCAGCAACTTGAAGAAGAAATGGGCGAACTGTCGTCTGAAATCATCAAAGTGAATTTTGCCAAAGCATCCGA
TATTGCTGAGATGATTAATGGTGAAGGTAATATCAGCATGCTCTCTGAGCGAGGCAGCATGACGACTGATGAGCGCACTA
ACTCACTATTGGTCAGAGAGTTGCCGGAGAATATCTTGGTTATTCGTGACATTATCGAGTCACTCGATATTCCGGTTATG
CAGGTCCAAATCGAAGCGAGGATTGTCACCGTCAGTGAAGGGAATATGGATGAACTCGGCATTCGATGGGGATTCTCTTC
CATCAACGGCAATAACACCGTTGGTGGCTCGATTGAAAATAACCTGGCAACCATTGGCCTTTATGAAGGTGATGGTGAAG
AGGGGGAGGGCGGCAGTGTAGGTATTGATGATTTTCTTAACGTCAACCTGGCCGCTACTAACCCGAGCGCAACCAGCATT
GCGTTTCAGGTCGCTAAGTTGGGCTCTGACACTTTGCTCGATCTGGAACTTTCTGCGCTGCAGCAGGAATCAAAAGCTGA
GATCATCTCAAGCCCTCGTTTAATCACGACTAATAAAAAACCTGCTTATATAGAACAAGGTACAGAAATTCCGTATCTAG
AATCATCATCGAGTGGTGCGACAACCATTACTTTCAAAAAAGCAGTATTAAGTCTGAAAGTCACGCCACAAATTACCCCG
GACAATCGCCTGGTGCTGGATTTGAGTGTTACTCAGGACAGACCGGGGCAAGTGGTAAAAACGGGGACTGGTGAAGCAGT
CACAATAGATACTCAAAGAATAGGCACTCAAGTCTTAGTCAACAACGGTGAGACGGTTGTTCTTGGCGGCATTTTCCAAC
ACAGCATTACCAACTCTGTCGATAAAGTGCCATTACTCGGTGATCTGCCGTTATTAGGTGCACTTTTCCGCAGAAGTTAT
GAAAAAGTTGGCAAAAGTGAACTGCTGATTTTCGTCACACCAAAGGTTGTTATTCAATAG

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(256-321)

Bacterial type II and III secretion system protein (Secretin)

(419-577)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

88.621

100

0.888
  pilQ Vibrio cholerae strain A1552

73.966

100

0.741
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

73.966

100

0.741
  pilQ Pseudomonas aeruginosa PAK

40.647

96.028

0.39
  pilQ Legionella pneumophila strain Lp02

40.909

94.991

0.389
  pilQ Legionella pneumophila strain ERS1305867

40.909

94.991

0.389
  comQ Acinetobacter baylyi ADP1

37.133

100

0.371
  pilQ Acinetobacter baumannii strain A118

37.024

99.827

0.37
  pilQ Acinetobacter baumannii D1279779

37.024

99.827

0.37