Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   OFO16_RS13690 Genome accession   NZ_CP107282
Coordinates   2961659..2962252 (-) Length   197 a.a.
NCBI ID   WP_263837577.1    Uniprot ID   -
Organism   Vibrio natriegens strain PWH3a     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2956659..2967252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFO16_RS13670 (OFO16_13670) aroB 2957491..2958591 (-) 1101 WP_263837574.1 3-dehydroquinate synthase -
  OFO16_RS13675 (OFO16_13675) aroK 2958623..2959141 (-) 519 WP_014233147.1 shikimate kinase AroK -
  OFO16_RS13680 (OFO16_13680) pilQ 2959330..2961069 (-) 1740 WP_263837575.1 type IV pilus secretin PilQ Machinery gene
  OFO16_RS13685 (OFO16_13685) pilP 2961154..2961669 (-) 516 WP_263837576.1 pilus assembly protein PilP Machinery gene
  OFO16_RS13690 (OFO16_13690) pilO 2961659..2962252 (-) 594 WP_263837577.1 type 4a pilus biogenesis protein PilO Machinery gene
  OFO16_RS13695 (OFO16_13695) pilN 2962245..2962820 (-) 576 WP_263837578.1 PilN domain-containing protein Machinery gene
  OFO16_RS13700 (OFO16_13700) pilM 2962804..2963820 (-) 1017 WP_263837579.1 type IV pilus assembly protein PilM Machinery gene
  OFO16_RS13705 (OFO16_13705) - 2963964..2966531 (+) 2568 WP_263837580.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 23117.54 Da        Isoelectric Point: 4.5395

>NTDB_id=739284 OFO16_RS13690 WP_263837577.1 2961659..2962252(-) (pilO) [Vibrio natriegens strain PWH3a]
MVNWQDLEMDEIAEWPLIPQLLAISLLILLLQGFGYWFYLMPKEERLNDLIQQEETLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSDHFLYQLPLNIELTGDFHDIGRFSQAIATLPRII
TFQNVTWQRVSQESETLHFRVRANTYQFKPEEKKDEE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=739284 OFO16_RS13690 WP_263837577.1 2961659..2962252(-) (pilO) [Vibrio natriegens strain PWH3a]
ATGGTTAATTGGCAAGATCTGGAAATGGATGAGATTGCTGAGTGGCCTTTAATTCCTCAGTTGCTAGCCATTAGTTTGTT
AATCCTGTTACTCCAAGGTTTTGGCTACTGGTTTTACCTAATGCCGAAGGAAGAACGATTAAACGACCTCATCCAGCAAG
AAGAAACACTTAAAGTTGCGTTACGAATTAAAGCCAACAAGGTTGCCGCATTACCGCAGCTCCAATCTCAGTTGGATGAA
TTGACCACACGTTATGAGTTGTTGTTGCAGCAATTACCCGCTCAGAAAGAGTTAGCTACCATGCTGGCGTCCGTTAATGA
GCTCGGCATAGACAATAAACTGACCTTCACGCGCATTGACTGGGGAGAAAAGCAGTCTGATCACTTTTTGTATCAGCTGC
CACTTAACATCGAGTTAACCGGTGATTTTCATGACATCGGCCGTTTCTCACAAGCGATTGCAACTTTACCACGCATCATC
ACTTTTCAAAATGTGACTTGGCAGCGCGTTAGTCAGGAGAGTGAAACACTGCACTTCCGGGTAAGAGCAAACACCTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGAAGAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(48-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio campbellii strain DS40M4

90

96.447

0.868
  pilO Vibrio cholerae strain A1552

71.204

96.954

0.69