Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACRAD_RS01360 Genome accession   NZ_AP019740
Coordinates   292088..293314 (-) Length   408 a.a.
NCBI ID   WP_005016988.1    Uniprot ID   A0A062BT18
Organism   Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 287088..298314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACRAD_RS16405 - 288274..288411 (+) 138 WP_016801149.1 hypothetical protein -
  ACRAD_RS01335 (ACRAD_02520) - 288479..288802 (+) 324 WP_005016998.1 pyrimidine/purine nucleoside phosphorylase -
  ACRAD_RS01340 (ACRAD_02530) rlmB 288906..289658 (+) 753 WP_005023068.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACRAD_RS01345 (ACRAD_02540) - 289683..290618 (+) 936 WP_005016993.1 DMT family transporter -
  ACRAD_RS01350 (ACRAD_02550) coaE 290615..291226 (-) 612 WP_005016991.1 dephospho-CoA kinase -
  ACRAD_RS01355 (ACRAD_02560) pilD 291228..292088 (-) 861 WP_005016989.1 A24 family peptidase Machinery gene
  ACRAD_RS01360 (ACRAD_02570) pilC 292088..293314 (-) 1227 WP_005016988.1 type II secretion system F family protein Machinery gene
  ACRAD_RS01365 (ACRAD_02580) pilB 293344..295053 (-) 1710 WP_005023073.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACRAD_RS01370 (ACRAD_02590) tpiA 295342..296136 (+) 795 WP_005023075.1 triose-phosphate isomerase -
  ACRAD_RS01375 (ACRAD_02600) secG 296147..296476 (+) 330 WP_005023077.1 preprotein translocase subunit SecG -
  ACRAD_RS01395 (ACRAD_02610) rimP 297103..297627 (+) 525 WP_005016981.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45019.50 Da        Isoelectric Point: 9.9504

>NTDB_id=73735 ACRAD_RS01360 WP_005016988.1 292088..293314(-) (pilC) [Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413]
MAVKKAQMMPTFAYDGVDRKGIKVKGELTAKNMALAKVTLRKQGITIKTIREKRRNILEGLMKKRVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKAEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSNWMQKYWFILIIAIAALIF
GFLEAKKRSQKFRDALDRMALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRASNRFPPMAVQMVAIGEESGALDAMLDKVATHFENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=73735 ACRAD_RS01360 WP_005016988.1 292088..293314(-) (pilC) [Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413]
ATGGCAGTCAAAAAAGCACAAATGATGCCGACTTTTGCTTATGACGGCGTCGACCGTAAAGGAATTAAAGTTAAAGGGGA
GCTGACAGCCAAGAATATGGCGTTGGCTAAGGTGACTTTGCGCAAGCAAGGAATAACTATCAAAACCATTCGGGAAAAAC
GTCGCAATATTCTAGAAGGCTTGATGAAGAAAAGGGTTTCTACACTAGATATCACTATCTTTACACGTCAGTTGGCCACC
ATGATGAAAGCGGGTGTGCCCCTTGTACAAGGCTTTGAAATTGTCGCTGAAGGTCTCGAAAATCCGGCTATGCGTGAAGT
GGTTTTGGGTATTAAGGCTGAAGTTGAAGGAGGCAATACATTTGCCGGTGCACTGCGTAAATATCCCCAATATTTTGATA
ACCTGTTCTGCTCACTGGTCGAATCTGGTGAACAGTCTGGTGCACTTGAGACCATGCTCGACCGGGTGGCCATCTATAAA
GAAAAGAGTGAACTTCTCAAGCAGAAAATTAAAAAGGCGATGAAATATCCCGCCACAGTTATTGTGGTTGCGGTGATTGT
AACGATTATTCTGATGGTTAAGGTAGTTCCGGTATTCCAGGACCTGTTTAGCTCGTTTGGTGCAGATCTGCCTGCATTTA
CCCAGATGGTTGTCAATATGTCGAACTGGATGCAGAAGTACTGGTTTATTCTCATTATCGCAATTGCTGCTCTTATTTTC
GGTTTTCTTGAAGCCAAAAAGCGGAGCCAGAAGTTCCGTGATGCGCTTGACAGAATGGCTCTTAAACTGCCAATTTTTGG
TGATCTGGTCTATAAAGCAATTATTGCCCGTTATAGCCGTACGCTAGCAACCACATTTGCAGCCGGCGTACCACTTATTG
ATGCGCTGGAATCTACTGCAGGTGCAACTAATAATGTAATTTATGAGCAGGCTGTCATGAAAATCCGGGAAGATGTAGCA
ACCGGTCAGCAGCTTCAGTTTGCTATGCGTGCCTCTAACCGTTTTCCGCCTATGGCAGTACAGATGGTTGCCATTGGAGA
AGAATCGGGCGCCCTTGATGCCATGTTAGATAAAGTCGCGACACATTTTGAAAATGAAGTTGACAATGCCGTTGACGGTC
TGACTTCCATGATGGAACCCCTGATTATGGCAATTCTGGGTGTATTAGTGGGTGGCCTTGTGATCGCCATGTATCTGCCA
ATTTTCCAGATGGGTTCAGTTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062BT18

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

90.931

100

0.909
  pilC Acinetobacter baylyi ADP1

85.294

100

0.853
  pilC Pseudomonas stutzeri DSM 10701

59.259

99.265

0.588
  pilC Legionella pneumophila strain ERS1305867

52.593

99.265

0.522
  pilG Neisseria gonorrhoeae MS11

46.366

97.794

0.453
  pilG Neisseria meningitidis 44/76-A

46.115

97.794

0.451
  pilC Vibrio cholerae strain A1552

44.118

100

0.441
  pilC Vibrio campbellii strain DS40M4

42.327

99.02

0.419
  pilC Thermus thermophilus HB27

37.406

98.284

0.368

Multiple sequence alignment