Detailed information NTG0073734

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACRAD_RS01355
• Genome accession: NZ_AP019740
• Coordinates: 291228..292088 (-)
• Length: 286 a.a.
• NCBI ID: WP_005016989.1
• Uniprot ID: A0A062C1I7
• Organism: Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 286228..297088

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACRAD_RS16405	-	288274..288411 (+)	138	WP_016801149.1	hypothetical protein	-
ACRAD_RS01335 (ACRAD_02520)	-	288479..288802 (+)	324	WP_005016998.1	pyrimidine/purine nucleoside phosphorylase	-
ACRAD_RS01340 (ACRAD_02530)	rlmB	288906..289658 (+)	753	WP_005023068.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ACRAD_RS01345 (ACRAD_02540)	-	289683..290618 (+)	936	WP_005016993.1	DMT family transporter	-
ACRAD_RS01350 (ACRAD_02550)	coaE	290615..291226 (-)	612	WP_005016991.1	dephospho-CoA kinase	-
ACRAD_RS01355 (ACRAD_02560)	pilD	291228..292088 (-)	861	WP_005016989.1	A24 family peptidase	Machinery gene
ACRAD_RS01360 (ACRAD_02570)	pilC	292088..293314 (-)	1227	WP_005016988.1	type II secretion system F family protein	Machinery gene
ACRAD_RS01365 (ACRAD_02580)	pilB	293344..295053 (-)	1710	WP_005023073.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACRAD_RS01370 (ACRAD_02590)	tpiA	295342..296136 (+)	795	WP_005023075.1	triose-phosphate isomerase	-
ACRAD_RS01375 (ACRAD_02600)	secG	296147..296476 (+)	330	WP_005023077.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31915.24 Da
• Isoelectric Point: 7.4686

>NTDB_id=73734 ACRAD_RS01355 WP_005016989.1 291228..292088(-) (pilD) [Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413]
MQELITLLSNNPTALYIVVGLFSLCIGSFLNVVILRTPKMMEQEWRNECQLLLHPDQPLIDETKLTLSYPASTCPNCHTP
IRWYQNLPLVSWLLLRGKCGQCQNPISIRYPLVELLTALCSLIVVAVYGPTLQMLFGLLLTWALITLTFIDFDTQLLPDR
YTLPLAALGLALNSYALYTSASSAIWGYVIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
VGAIIGIVLLKIRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=73734 ACRAD_RS01355 WP_005016989.1 291228..292088(-) (pilD) [Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413]
ATGCAAGAATTAATTACCTTATTAAGTAATAACCCGACTGCGCTCTACATTGTGGTTGGGCTTTTCAGTCTATGTATTGG
CAGTTTTTTAAATGTCGTTATTCTTCGCACTCCTAAAATGATGGAGCAGGAATGGCGCAATGAATGTCAGTTGTTGCTTC
ATCCAGATCAGCCCCTAATTGATGAAACAAAACTCACGCTCAGCTATCCGGCTTCTACCTGTCCCAACTGTCATACGCCG
ATTCGCTGGTATCAGAATCTGCCTTTAGTCAGCTGGCTGCTACTCAGAGGCAAATGTGGTCAATGCCAGAATCCGATCAG
TATCCGTTACCCTCTAGTTGAACTTTTAACTGCTCTGTGTTCACTTATTGTAGTAGCTGTCTATGGCCCTACCCTGCAAA
TGCTATTTGGTCTGTTACTGACTTGGGCATTAATTACCCTGACCTTCATCGATTTTGATACACAACTGCTTCCAGACCGG
TATACCCTGCCGCTTGCCGCCCTAGGCCTAGCTCTGAACAGTTATGCATTATATACCTCGGCAAGCTCTGCTATTTGGGG
TTATGTGATTGGGTTTTTATGCTTATGGATTGTATATTATCTGTTTAAAGTCATCACCGGTAAAGAAGGCATGGGATACG
GGGACTTTAAGTTACTGGCCGCACTCGGAGCCTGGATGGGTCCTTTAATGCTGCCTTTAATTGTGCTACTTTCATCTTTA
GTCGGGGCAATTATTGGTATCGTACTGCTCAAGATTCGCAAGGAAAACCAGCCTTTTGCCTTTGGTCCCTATATTGCGAT
TGCCGGCTGGATCGCTTTTTTATGGGGTGAGCAAATTATGAAAATTTATCTGGGAGGCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

3D structure

• AlphaFold DB: A0A062C1I7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	79.72	100	0.797
pilD	Acinetobacter baumannii D1279779	78.671	100	0.787
pilD	Vibrio cholerae strain A1552	53.875	94.755	0.51
pilD	Vibrio campbellii strain DS40M4	51.087	96.503	0.493
pilD	Neisseria gonorrhoeae MS11	47.312	97.552	0.462