Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OCT51_RS12265 Genome accession   NZ_CP107009
Coordinates   2613995..2615227 (+) Length   410 a.a.
NCBI ID   WP_263580126.1    Uniprot ID   -
Organism   Halomonas sp. LR3S48     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2608995..2620227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCT51_RS12250 (OCT51_12250) - 2609391..2611181 (-) 1791 WP_263580124.1 polymer-forming cytoskeletal protein -
  OCT51_RS21890 - 2611362..2611739 (-) 378 WP_412031173.1 pilin -
  OCT51_RS12260 (OCT51_12260) pilB 2612135..2613928 (+) 1794 WP_263580125.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OCT51_RS12265 (OCT51_12265) pilC 2613995..2615227 (+) 1233 WP_263580126.1 type II secretion system F family protein Machinery gene
  OCT51_RS12270 (OCT51_12270) pilD 2615230..2616057 (+) 828 WP_263580127.1 prepilin peptidase Machinery gene
  OCT51_RS12275 (OCT51_12275) coaE 2616085..2616690 (+) 606 WP_263580128.1 dephospho-CoA kinase -
  OCT51_RS12280 (OCT51_12280) yacG 2616750..2616977 (+) 228 WP_263580129.1 DNA gyrase inhibitor YacG -
  OCT51_RS12285 (OCT51_12285) - 2616980..2617843 (+) 864 WP_412031226.1 DNA replication terminus site-binding protein -
  OCT51_RS12290 (OCT51_12290) - 2617873..2618610 (-) 738 WP_263580130.1 tellurite resistance TerB family protein -
  OCT51_RS12295 (OCT51_12295) - 2618687..2619286 (-) 600 WP_263580131.1 2-hydroxychromene-2-carboxylate isomerase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45054.78 Da        Isoelectric Point: 9.9285

>NTDB_id=737339 OCT51_RS12265 WP_263580126.1 2613995..2615227(+) (pilC) [Halomonas sp. LR3S48]
MATRTARAPKKLRLYRWRWTGKGPGGRLVSGEVVAAEKFEVERELANQNIIVKNVRRKGGLTGGMGTIKPRDIMLFARQM
ATMIRAGVPVLQAFQVVAESIRKPAMSAVVQQLMNEVAAGSSFSQALRNHPDQFDSLFCNLVEAGESSGSLDRMLDRVAT
YKEKVESLKGRVKKALWYPIAVILVGVGVTALLLIKVVPQFESLFHGFGAELPAMTRMTIALSEFAQQYWLWGLAGLIAF
VYLMRQGIKRSPAFAYRVHAFLLKVPVLGDIFDKSAVARYSRTLATTYGAGVPMVEALDIAAGATGNLVYERATRQIRED
VSNGQQLHFAMRLTERFPALAVQMVGIGEESGALDAMLNRVADYYEEEVDNKVDALTSLLEPLIIVVLGILVGGLVISMY
LPIFELGTVL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=737339 OCT51_RS12265 WP_263580126.1 2613995..2615227(+) (pilC) [Halomonas sp. LR3S48]
ATGGCAACCAGAACCGCAAGAGCGCCAAAGAAACTGAGACTGTACCGCTGGCGCTGGACCGGCAAGGGCCCCGGCGGGCG
TCTGGTCAGCGGTGAGGTAGTGGCCGCCGAGAAGTTCGAGGTGGAACGCGAGCTGGCCAACCAGAACATCATCGTCAAGA
ACGTGCGTCGCAAGGGCGGGCTCACCGGCGGCATGGGCACCATCAAGCCCAGGGACATAATGCTTTTCGCTCGCCAGATG
GCCACCATGATTCGCGCCGGCGTGCCGGTGTTGCAAGCGTTCCAGGTGGTGGCCGAGAGTATCCGCAAGCCGGCCATGAG
CGCGGTGGTCCAGCAGTTGATGAACGAGGTGGCGGCCGGCTCGAGCTTTTCCCAGGCGCTGCGCAATCACCCCGATCAGT
TCGACAGCCTGTTCTGCAACCTGGTGGAAGCGGGCGAGAGTTCCGGCTCGCTGGACCGCATGCTCGACCGTGTCGCCACC
TACAAGGAGAAGGTGGAATCGCTCAAGGGCCGGGTGAAGAAGGCGCTGTGGTACCCCATCGCGGTGATCCTGGTCGGGGT
CGGCGTGACGGCACTGCTGCTGATCAAGGTGGTGCCCCAGTTCGAGAGCCTGTTCCACGGCTTCGGCGCCGAACTGCCGG
CCATGACCCGCATGACCATTGCCCTTTCCGAATTCGCCCAGCAGTACTGGCTGTGGGGCCTGGCCGGGCTGATCGCCTTC
GTCTACCTGATGCGCCAGGGCATCAAGCGCTCGCCTGCGTTCGCCTATCGCGTGCATGCGTTCCTGCTCAAGGTGCCGGT
GCTGGGCGACATCTTCGATAAATCCGCCGTGGCGCGCTATTCGCGCACCCTGGCGACCACCTACGGCGCCGGCGTGCCCA
TGGTGGAGGCGCTGGACATTGCCGCCGGGGCCACCGGCAACCTGGTCTACGAACGCGCCACACGGCAGATCCGCGAAGAC
GTGTCCAACGGCCAGCAACTCCATTTCGCCATGCGCCTGACCGAGCGCTTCCCCGCCCTGGCGGTGCAGATGGTCGGCAT
CGGCGAGGAATCCGGCGCGCTGGACGCCATGCTCAACCGCGTGGCGGACTATTACGAGGAGGAGGTCGACAACAAGGTCG
ACGCCCTCACCTCGTTGCTGGAGCCGCTGATCATCGTGGTGCTGGGGATTCTGGTCGGCGGCCTGGTCATTTCCATGTAC
CTGCCGATCTTCGAGCTGGGCACGGTGTTGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)

Type II secretion system (T2SS), protein F (T2SSF)

(281-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.208

98.537

0.534
  pilC Acinetobacter baylyi ADP1

51.385

96.829

0.498
  pilC Acinetobacter baumannii D1279779

50.882

96.829

0.493
  pilC Legionella pneumophila strain ERS1305867

49.874

96.829

0.483
  pilC Vibrio cholerae strain A1552

43.489

99.268

0.432
  pilC Vibrio campbellii strain DS40M4

43.564

98.537

0.429
  pilG Neisseria meningitidis 44/76-A

43.75

93.659

0.41
  pilG Neisseria gonorrhoeae MS11

43.75

93.659

0.41
  pilC Thermus thermophilus HB27

36.725

98.293

0.361