Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   QA712_RS09835 Genome accession   NZ_CP121539
Coordinates   1843291..1844007 (-) Length   238 a.a.
NCBI ID   WP_021466934.1    Uniprot ID   -
Organism   Lactococcus lactis strain MA5     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1838291..1849007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA712_RS09820 (QA712_09820) cdaA 1839983..1840861 (+) 879 WP_003131542.1 diadenylate cyclase CdaA -
  QA712_RS09825 (QA712_09825) - 1840851..1841810 (+) 960 WP_372757092.1 YbbR-like domain-containing protein -
  QA712_RS09830 (QA712_09830) glmM 1841856..1843214 (+) 1359 WP_003131539.1 phosphoglucosamine mutase -
  QA712_RS09835 (QA712_09835) treR 1843291..1844007 (-) 717 WP_021466934.1 trehalose operon repressor Regulator
  QA712_RS09840 (QA712_09840) - 1844118..1844603 (+) 486 WP_015425865.1 PTS glucose transporter subunit IIA -
  QA712_RS09845 (QA712_09845) - 1844740..1846305 (+) 1566 WP_372757094.1 PTS transporter subunit EIIC -
  QA712_RS09850 (QA712_09850) - 1846373..1848682 (+) 2310 WP_372757096.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27906.57 Da        Isoelectric Point: 6.4168

>NTDB_id=737339 QA712_RS09835 WP_021466934.1 1843291..1844007(-) (treR) [Lactococcus lactis strain MA5]
MKKYEVILQDLEKKIFNDIYKTNDILPSENELSVNYESSRSTVRQALKILEEKGLIQRRHGYGSIVLAHDRLLFPISGLT
SYKELQTSMGFHSETEVIRFERLEINPKLSETTGFAVGEHAISILRRRKVDGKFSILDWDLFLEKYSEGLTPEHAKISTY
DYLEDNLGLDIAYAQKEVTIDFACEDDFKYLDLNPKDHHVVSVKSHVYLADNTLFQYTESRHQVDRFRFTEFARRQKR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=737339 QA712_RS09835 WP_021466934.1 1843291..1844007(-) (treR) [Lactococcus lactis strain MA5]
ATGAAGAAATATGAAGTGATTTTGCAAGATTTAGAAAAAAAGATTTTTAACGATATCTATAAAACGAACGATATTCTTCC
GAGTGAAAATGAGCTCTCTGTTAATTACGAGAGCAGTCGTTCAACAGTCAGACAGGCTTTAAAAATTTTAGAAGAGAAAG
GGCTTATTCAAAGACGACATGGCTATGGTAGCATTGTCCTCGCTCACGATAGGCTCCTTTTCCCTATCTCTGGCTTAACT
TCATACAAAGAACTACAAACCTCAATGGGTTTCCATAGTGAAACTGAGGTCATTCGCTTTGAAAGACTTGAAATTAACCC
TAAACTTTCAGAAACAACTGGTTTTGCCGTTGGGGAACACGCCATAAGTATTCTCAGAAGGCGCAAAGTAGATGGCAAAT
TTTCAATTTTAGATTGGGATTTATTTTTAGAAAAATATTCCGAAGGTTTAACTCCAGAACATGCTAAAATTTCAACCTAT
GACTACTTAGAAGATAATTTAGGGCTTGACATTGCCTATGCTCAAAAGGAAGTCACGATTGATTTTGCTTGCGAAGATGA
CTTTAAATACCTTGACTTAAATCCCAAAGACCATCATGTCGTTTCTGTCAAATCCCATGTTTATCTTGCTGATAATACTC
TTTTTCAGTATACTGAATCTCGACATCAAGTCGACCGCTTTCGTTTCACAGAATTCGCTAGACGACAAAAAAGATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(89-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

46.414

99.58

0.462