Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   OCT51_RS12270 Genome accession   NZ_CP107009
Coordinates   2615230..2616057 (+) Length   275 a.a.
NCBI ID   WP_263580127.1    Uniprot ID   -
Organism   Halomonas sp. LR3S48     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2610230..2621057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCT51_RS21890 - 2611362..2611739 (-) 378 WP_412031173.1 pilin -
  OCT51_RS12260 (OCT51_12260) pilB 2612135..2613928 (+) 1794 WP_263580125.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OCT51_RS12265 (OCT51_12265) pilC 2613995..2615227 (+) 1233 WP_263580126.1 type II secretion system F family protein Machinery gene
  OCT51_RS12270 (OCT51_12270) pilD 2615230..2616057 (+) 828 WP_263580127.1 prepilin peptidase Machinery gene
  OCT51_RS12275 (OCT51_12275) coaE 2616085..2616690 (+) 606 WP_263580128.1 dephospho-CoA kinase -
  OCT51_RS12280 (OCT51_12280) yacG 2616750..2616977 (+) 228 WP_263580129.1 DNA gyrase inhibitor YacG -
  OCT51_RS12285 (OCT51_12285) - 2616980..2617843 (+) 864 WP_412031226.1 DNA replication terminus site-binding protein -
  OCT51_RS12290 (OCT51_12290) - 2617873..2618610 (-) 738 WP_263580130.1 tellurite resistance TerB family protein -
  OCT51_RS12295 (OCT51_12295) - 2618687..2619286 (-) 600 WP_263580131.1 2-hydroxychromene-2-carboxylate isomerase -

Sequence

Protein


Download         Length: 275 a.a.        Molecular weight: 29680.92 Da        Isoelectric Point: 7.8594

>NTDB_id=737340 OCT51_RS12270 WP_263580127.1 2615230..2616057(+) (pilD) [Halomonas sp. LR3S48]
MVWLLAAVLGLCLGSFLNVVIVRLPVMLMLGWRAEAREALELPEEASPRFNLLVPRSICPQCETPIAWHDNLPVIGWFKR
RGRCAACEARISPQYPLVELAGACLALAVVALYGVSWQGLFVFGACLALLALAVIDLRTQLLPDVVTLPLLWAGLLYQLL
FQPLLLPSAVIGAMAGYLALWSVYWLFKLITGKEGMGYGDFKLLAALGAWLGWQSLPMVLILSAGVGAIVGVAIQLALPR
MRGAPMPFGPFLASAGWIALLVGEPLMAVYVGMTL

Nucleotide


Download         Length: 828 bp        

>NTDB_id=737340 OCT51_RS12270 WP_263580127.1 2615230..2616057(+) (pilD) [Halomonas sp. LR3S48]
ATGGTGTGGTTGCTGGCGGCCGTGCTGGGCCTTTGCCTGGGTAGCTTCCTCAACGTGGTGATCGTGCGCTTGCCAGTCAT
GCTGATGCTGGGCTGGCGGGCCGAGGCCCGCGAGGCACTGGAACTGCCAGAGGAGGCGTCGCCCCGCTTCAACCTGCTGG
TGCCGCGCTCGATTTGCCCTCAATGCGAAACGCCCATTGCCTGGCACGACAACCTGCCGGTCATCGGCTGGTTCAAGCGA
CGCGGCCGCTGTGCTGCCTGTGAAGCACGCATCAGCCCTCAGTATCCACTGGTGGAACTGGCCGGCGCCTGTCTGGCGCT
GGCCGTGGTGGCGCTGTACGGCGTCTCCTGGCAGGGCCTGTTCGTCTTCGGTGCCTGCCTGGCGCTGCTGGCACTTGCCG
TGATCGACCTGCGCACCCAGTTGCTGCCGGATGTCGTTACCCTGCCACTGCTGTGGGCGGGCCTGCTCTACCAGTTGCTG
TTCCAGCCCCTGCTGCTGCCCAGCGCGGTGATCGGCGCCATGGCGGGCTATCTTGCCCTGTGGAGCGTCTACTGGCTGTT
CAAGCTGATTACCGGCAAGGAAGGCATGGGCTACGGCGACTTCAAGCTGCTGGCGGCCCTGGGCGCCTGGCTGGGCTGGC
AGTCCCTGCCGATGGTGCTGATCCTTTCCGCCGGCGTGGGCGCCATCGTGGGTGTCGCCATTCAGCTTGCCCTGCCCCGG
ATGCGCGGCGCGCCGATGCCCTTCGGCCCTTTCCTGGCCAGCGCCGGCTGGATTGCGCTATTGGTGGGCGAGCCGCTGAT
GGCCGTTTATGTCGGCATGACACTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(126-232)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

52.899

100

0.531
  pilD Vibrio campbellii strain DS40M4

50.73

99.636

0.505
  pilD Acinetobacter baumannii D1279779

46.739

100

0.469
  pilD Acinetobacter nosocomialis M2

46.014

100

0.462
  pilD Neisseria gonorrhoeae MS11

45.802

95.273

0.436