Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   M9799_RS05330 Genome accession   NZ_CP106881
Coordinates   1210398..1211606 (+) Length   402 a.a.
NCBI ID   WP_231043474.1    Uniprot ID   -
Organism   Comamonas endophytica strain 5MLIR     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1205398..1216606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9799_RS05305 (M9799_05305) - 1205584..1205928 (-) 345 WP_231043479.1 KGG domain-containing protein -
  M9799_RS05310 (M9799_05310) - 1206144..1206653 (-) 510 WP_231043478.1 hypothetical protein -
  M9799_RS05315 (M9799_05315) - 1206761..1208047 (+) 1287 WP_231043477.1 SDR family oxidoreductase -
  M9799_RS05320 (M9799_05320) - 1208059..1208526 (+) 468 WP_231043476.1 DUF2269 domain-containing protein -
  M9799_RS05325 (M9799_05325) pilB 1208645..1210384 (+) 1740 WP_231043475.1 type IV-A pilus assembly ATPase PilB Machinery gene
  M9799_RS05330 (M9799_05330) pilC 1210398..1211606 (+) 1209 WP_231043474.1 type II secretion system F family protein Machinery gene
  M9799_RS05335 (M9799_05335) pilD 1211606..1212487 (+) 882 WP_231043473.1 A24 family peptidase Machinery gene
  M9799_RS05340 (M9799_05340) coaE 1212487..1213119 (+) 633 WP_231043472.1 dephospho-CoA kinase -
  M9799_RS05345 (M9799_05345) zapD 1213180..1213935 (+) 756 WP_231043471.1 cell division protein ZapD -
  M9799_RS05350 (M9799_05350) - 1213943..1214152 (+) 210 WP_231043470.1 DNA gyrase inhibitor YacG -
  M9799_RS05355 (M9799_05355) - 1214149..1214607 (-) 459 WP_231043469.1 NUDIX domain-containing protein -
  M9799_RS05360 (M9799_05360) - 1214604..1215548 (-) 945 WP_231043468.1 ATP-binding protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 44069.77 Da        Isoelectric Point: 9.4428

>NTDB_id=736402 M9799_RS05330 WP_231043474.1 1210398..1211606(+) (pilC) [Comamonas endophytica strain 5MLIR]
MATAGIQDFVFEWEGKDRHGKIVRGETRAGGENQVQATLRRQGIFPTRIKKRRTRSGKKIKPKDIALFTRQLATMMKAGV
PLLQSFDIVARGNTNASVTRLLNDIRADVEVGTSLNAAFRKHPMYFNSLYCNLVEAGESAGILETLLDRLALYMEKTEAI
KGKIKSALMYPSAVIVVTFVVIAVIMIFVVPAFKEVFSSFGADLPAPTLLVMAISDVFVQWWWLIFGLIGGGIYFFMQAW
RRSPNIQMTMDRLMLRLPIFGVLIQKSSVARWTRTLSTMFAAGVPLVEALDSVGGAAGNAVYAQATEKIQQEVSTGTSLT
AAMTATNVFPSMVLQMCAIGEESGSIDHMLGKAADFYEQEVDEMVAGLSSLMEPIIIVFLGTIIGGIVVAMYLPIFQLGQ
VV

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=736402 M9799_RS05330 WP_231043474.1 1210398..1211606(+) (pilC) [Comamonas endophytica strain 5MLIR]
ATGGCGACAGCAGGCATCCAGGATTTCGTCTTCGAGTGGGAAGGCAAGGACCGGCACGGCAAGATCGTGCGCGGCGAGAC
GCGCGCGGGCGGCGAGAACCAGGTGCAGGCCACGCTGCGGCGCCAGGGCATCTTTCCCACGCGCATCAAGAAGCGCCGCA
CCCGCTCGGGCAAGAAGATCAAGCCCAAGGACATCGCGCTGTTCACGCGCCAGCTGGCCACGATGATGAAGGCCGGCGTG
CCGCTGCTGCAGTCCTTCGACATCGTCGCGCGCGGCAACACCAACGCCAGCGTGACCCGCCTGCTCAACGACATCCGCGC
CGACGTCGAGGTGGGCACCTCGCTGAACGCGGCCTTCCGCAAGCATCCGATGTATTTCAACAGCCTCTACTGCAACCTGG
TCGAGGCCGGGGAATCGGCCGGCATCCTGGAGACCCTGCTCGACCGGCTGGCGCTCTACATGGAAAAGACCGAGGCCATC
AAGGGCAAGATCAAATCGGCCCTGATGTATCCGAGCGCGGTGATCGTCGTCACCTTCGTGGTCATCGCGGTGATCATGAT
CTTCGTGGTGCCGGCCTTCAAGGAGGTGTTCAGCTCCTTCGGCGCGGACCTGCCCGCGCCCACGCTGCTGGTCATGGCCA
TCAGCGACGTCTTCGTGCAGTGGTGGTGGCTGATCTTCGGCCTGATCGGCGGCGGCATCTACTTCTTCATGCAGGCCTGG
CGGCGCAGCCCGAACATCCAGATGACCATGGACCGGCTCATGCTGCGCCTGCCGATCTTCGGCGTGCTGATACAGAAATC
CAGCGTCGCGCGCTGGACGCGCACGCTCTCGACGATGTTTGCCGCGGGCGTGCCGCTGGTCGAGGCGCTGGATTCGGTGG
GCGGCGCGGCGGGCAATGCCGTCTATGCCCAGGCCACCGAGAAGATCCAGCAGGAGGTCTCGACCGGCACCAGCCTCACG
GCCGCCATGACCGCGACCAATGTGTTTCCCTCGATGGTGCTGCAGATGTGCGCCATCGGCGAGGAATCGGGCTCGATCGA
CCACATGCTGGGCAAGGCCGCCGATTTCTACGAGCAGGAGGTCGACGAGATGGTGGCCGGCCTGTCGAGCCTGATGGAGC
CGATCATCATCGTCTTCCTTGGCACCATCATCGGCGGCATCGTGGTCGCCATGTACCTGCCGATCTTCCAGCTGGGCCAG
GTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(272-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.074

100

0.545
  pilG Neisseria gonorrhoeae MS11

53.133

99.254

0.527
  pilG Neisseria meningitidis 44/76-A

52.882

99.254

0.525
  pilC Acinetobacter baylyi ADP1

51.005

99.005

0.505
  pilC Legionella pneumophila strain ERS1305867

50.253

98.507

0.495
  pilC Acinetobacter baumannii D1279779

49.118

98.756

0.485
  pilC Vibrio campbellii strain DS40M4

38.592

100

0.396
  pilC Vibrio cholerae strain A1552

40.05

98.756

0.396
  pilC Thermus thermophilus HB27

39.109

100

0.393