Detailed information NTG0736403

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: M9799_RS05335
• Genome accession: NZ_CP106881
• Coordinates: 1211606..1212487 (+)
• Length: 293 a.a.
• NCBI ID: WP_231043473.1
• Uniprot ID: -
• Organism: Comamonas endophytica strain 5MLIR
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1206606..1217487

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M9799_RS05315 (M9799_05315)	-	1206761..1208047 (+)	1287	WP_231043477.1	SDR family oxidoreductase	-
M9799_RS05320 (M9799_05320)	-	1208059..1208526 (+)	468	WP_231043476.1	DUF2269 domain-containing protein	-
M9799_RS05325 (M9799_05325)	pilB	1208645..1210384 (+)	1740	WP_231043475.1	type IV-A pilus assembly ATPase PilB	Machinery gene
M9799_RS05330 (M9799_05330)	pilC	1210398..1211606 (+)	1209	WP_231043474.1	type II secretion system F family protein	Machinery gene
M9799_RS05335 (M9799_05335)	pilD	1211606..1212487 (+)	882	WP_231043473.1	A24 family peptidase	Machinery gene
M9799_RS05340 (M9799_05340)	coaE	1212487..1213119 (+)	633	WP_231043472.1	dephospho-CoA kinase	-
M9799_RS05345 (M9799_05345)	zapD	1213180..1213935 (+)	756	WP_231043471.1	cell division protein ZapD	-
M9799_RS05350 (M9799_05350)	-	1213943..1214152 (+)	210	WP_231043470.1	DNA gyrase inhibitor YacG	-
M9799_RS05355 (M9799_05355)	-	1214149..1214607 (-)	459	WP_231043469.1	NUDIX domain-containing protein	-
M9799_RS05360 (M9799_05360)	-	1214604..1215548 (-)	945	WP_231043468.1	ATP-binding protein	-
M9799_RS05365 (M9799_05365)	argJ	1215707..1216936 (-)	1230	WP_231043467.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 31382.14 Da
• Isoelectric Point: 8.1566

>NTDB_id=736403 M9799_RS05335 WP_231043473.1 1211606..1212487(+) (pilD) [Comamonas endophytica strain 5MLIR]
MPMGWEFAALGGVLGLLIGSFLNVVIHRLPKIMERQWAEECLQHAQEQALAAGQAPPPAAAAEPFSLSTPRSRCPHCGHA
IRWYENIPVLSYLALRGQCAACKARISPRYPLVELATAALFAFCLGKWGLTATGLAWCGFSAALLALALIDWDTTLLPDG
ITLPLLWAGLLAAALRWTEVPLADAVWGAAAGYLSLWLVFWGFKLATGKDGMGYGDFKLFAALGAWFGWQALVPMILAAS
VIGAVVGIAMKLRSQLREGGYIPFGPFLAGAGFAALLFGPQRMLERFLALLGL

Nucleotide

• Length: 882 bp

>NTDB_id=736403 M9799_RS05335 WP_231043473.1 1211606..1212487(+) (pilD) [Comamonas endophytica strain 5MLIR]
ATGCCGATGGGTTGGGAATTCGCCGCCCTGGGCGGCGTGCTGGGCCTGCTGATCGGCAGTTTCCTGAACGTGGTGATCCA
CCGCCTGCCGAAGATCATGGAGCGGCAATGGGCCGAGGAATGCCTGCAGCATGCGCAGGAGCAGGCACTGGCCGCGGGCC
AGGCCCCGCCTCCCGCTGCGGCCGCGGAACCCTTCAGCCTGAGCACCCCGCGTTCGCGCTGCCCGCACTGCGGCCATGCG
ATCCGCTGGTATGAAAACATCCCGGTGCTGAGCTATCTGGCGCTGCGCGGGCAATGCGCGGCGTGCAAGGCGCGCATCAG
CCCGCGCTATCCGCTGGTGGAGCTGGCCACGGCCGCGCTGTTCGCCTTCTGCCTGGGAAAGTGGGGTCTCACCGCCACCG
GCCTGGCATGGTGCGGCTTCAGCGCCGCGCTGCTGGCGCTGGCGCTGATCGACTGGGACACCACGCTGCTGCCCGACGGC
ATCACGCTGCCGCTGCTATGGGCAGGACTGCTCGCGGCGGCACTGCGCTGGACGGAAGTGCCGCTGGCCGATGCGGTCTG
GGGCGCGGCCGCGGGCTATCTGTCGCTGTGGCTGGTGTTCTGGGGCTTCAAGCTGGCGACCGGCAAGGACGGCATGGGCT
ATGGCGACTTCAAGCTGTTTGCCGCGCTGGGCGCCTGGTTCGGCTGGCAGGCGCTGGTGCCGATGATCCTTGCGGCCTCG
GTGATCGGCGCGGTGGTCGGCATTGCCATGAAGCTGCGCAGCCAGCTGCGCGAGGGCGGCTACATTCCTTTCGGCCCGTT
CCTGGCGGGCGCCGGCTTTGCGGCCCTCCTCTTCGGGCCGCAGCGCATGCTCGAGCGCTTCCTGGCGCTGCTGGGGCTGT
GA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (141-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.518	94.881	0.498
pilD	Vibrio campbellii strain DS40M4	48.276	98.976	0.478
pilD	Neisseria gonorrhoeae MS11	46.768	89.761	0.42
pilD	Acinetobacter baumannii D1279779	44.853	92.833	0.416
pilD	Acinetobacter nosocomialis M2	44.485	92.833	0.413