Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   OE105_RS11295 Genome accession   NZ_CP106877
Coordinates   2414520..2414867 (-) Length   115 a.a.
NCBI ID   WP_275420279.1    Uniprot ID   A0A9E8LYN8
Organism   Fervidibacillus halotolerans strain MEBiC13594     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2409520..2419867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OE105_RS11280 (OE105_11285) - 2410733..2413861 (+) 3129 WP_275420276.1 DEAD/DEAH box helicase -
  OE105_RS11285 (OE105_11290) - 2414069..2414242 (-) 174 WP_275420277.1 hypothetical protein -
  OE105_RS11290 (OE105_11295) - 2414302..2414451 (-) 150 WP_275420278.1 hypothetical protein -
  OE105_RS11295 (OE105_11300) ssbB 2414520..2414867 (-) 348 WP_275420279.1 single-stranded DNA-binding protein Machinery gene
  OE105_RS11300 (OE105_11305) - 2415137..2415586 (+) 450 WP_275420280.1 YwpF family protein -
  OE105_RS11305 (OE105_11310) - 2415642..2415956 (-) 315 WP_275420281.1 hypothetical protein -
  OE105_RS11310 (OE105_11315) - 2416437..2416802 (+) 366 WP_275420282.1 hypothetical protein -
  OE105_RS11315 (OE105_11320) fabZ 2417133..2417555 (-) 423 WP_275420283.1 3-hydroxyacyl-ACP dehydratase FabZ -
  OE105_RS11320 (OE105_11325) - 2417586..2418047 (-) 462 WP_275420284.1 DNA-directed RNA polymerase subunit beta -
  OE105_RS11325 (OE105_11330) - 2418074..2418901 (-) 828 WP_275420285.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12994.82 Da        Isoelectric Point: 9.0676

>NTDB_id=736339 OE105_RS11295 WP_275420279.1 2414520..2414867(-) (ssbB) [Fervidibacillus halotolerans strain MEBiC13594]
MINQVTLVGRLVRDPELKITQEGTAVTNVTLAVNRNYKNSQGMIDTDFIQCTLWKRAAENTVQYCRKGSVIGIVGRIQTR
NYTNSEGRKVYVTEVIADSVRFLDSKPVEEREIAT

Nucleotide


Download         Length: 348 bp        

>NTDB_id=736339 OE105_RS11295 WP_275420279.1 2414520..2414867(-) (ssbB) [Fervidibacillus halotolerans strain MEBiC13594]
GTGATTAATCAAGTTACATTAGTAGGAAGGCTTGTCCGTGATCCAGAATTAAAAATTACCCAAGAGGGAACAGCGGTGAC
GAATGTGACGCTAGCTGTCAATCGGAATTATAAAAATAGCCAAGGAATGATCGACACCGATTTCATCCAATGTACCCTTT
GGAAAAGGGCGGCGGAAAACACCGTCCAATATTGTCGGAAGGGAAGCGTCATTGGGATCGTTGGTAGAATTCAAACGAGA
AATTATACGAATAGTGAAGGGCGGAAAGTTTATGTGACGGAAGTGATTGCCGATTCGGTTCGCTTCCTCGATAGCAAACC
GGTAGAAGAGAGGGAAATCGCCACATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.909

95.652

0.583
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.774

92.174

0.496
  ssb Latilactobacillus sakei subsp. sakei 23K

47.748

96.522

0.461
  ssbA Streptococcus mutans UA159

43.396

92.174

0.4
  ssbB Lactococcus lactis subsp. cremoris KW2

42.857

91.304

0.391
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.509

92.174

0.383
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.566

92.174

0.374
  ssbB/cilA Streptococcus mitis SK321

39.623

92.174

0.365
  ssbB/cilA Streptococcus pneumoniae Rx1

39.623

92.174

0.365
  ssbB/cilA Streptococcus pneumoniae D39

39.623

92.174

0.365
  ssbB/cilA Streptococcus pneumoniae R6

39.623

92.174

0.365