Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NBH81_RS02260 Genome accession   NZ_CP106828
Coordinates   457643..458884 (-) Length   413 a.a.
NCBI ID   WP_005336136.1    Uniprot ID   A0A0T6QCE0
Organism   Aeromonas veronii strain jsyz553301     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 452643..463884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBH81_RS02235 (NBH81_02235) mutT 454636..455040 (+) 405 WP_019444787.1 8-oxo-dGTP diphosphatase MutT -
  NBH81_RS02240 (NBH81_02240) yacG 455118..455312 (-) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  NBH81_RS02245 (NBH81_02245) zapD 455322..456044 (-) 723 WP_005336141.1 cell division protein ZapD -
  NBH81_RS02250 (NBH81_02250) coaE 456082..456696 (-) 615 WP_201938611.1 dephospho-CoA kinase -
  NBH81_RS02255 (NBH81_02255) pilD 456709..457581 (-) 873 WP_263085266.1 A24 family peptidase Machinery gene
  NBH81_RS02260 (NBH81_02260) pilC 457643..458884 (-) 1242 WP_005336136.1 type II secretion system F family protein Machinery gene
  NBH81_RS02265 (NBH81_02265) pilB 459125..460831 (-) 1707 WP_005336134.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  NBH81_RS02270 (NBH81_02270) - 460835..461278 (-) 444 WP_263085267.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  NBH81_RS02275 (NBH81_02275) nadC 461594..462457 (-) 864 WP_263085268.1 carboxylating nicotinate-nucleotide diphosphorylase -
  NBH81_RS02280 (NBH81_02280) - 462461..462931 (-) 471 WP_040068932.1 TIGR02281 family clan AA aspartic protease -
  NBH81_RS02285 (NBH81_02285) ampD 463059..463634 (+) 576 WP_263085269.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45427.55 Da        Isoelectric Point: 9.7221

>NTDB_id=735941 NBH81_RS02260 WP_005336136.1 457643..458884(-) (pilC) [Aeromonas veronii strain jsyz553301]
MATLTKKNNAPKKVFAFRWHGVNRKGQKVSGELQADSINTVKTELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPLYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPVFTQFVIGISRFMQNWWYVFFGGTA
LGIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVIA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=735941 NBH81_RS02260 WP_005336136.1 457643..458884(-) (pilC) [Aeromonas veronii strain jsyz553301]
ATGGCAACCCTAACGAAAAAGAACAATGCCCCCAAGAAAGTCTTCGCCTTCCGCTGGCATGGGGTAAATCGCAAGGGGCA
GAAGGTCTCCGGCGAGCTGCAGGCCGACAGCATCAACACCGTCAAGACCGAACTGCGCAAGCAGGGGGTCAACGTCACCA
AGGTAGCCAAGAAATCCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGATATCGCCATCGTCTCACGC
CAAATAACTACCATGCTCTCCGCCGGGGTACCGCTGGTGCAGAGCCTGCAGATTATCGCCCGCAGCCACGAGAAAGCCTC
GATGCGCGAGCTGATGGGGCAGATTGCCGCCGATGTGGAGACTGGCACCCCCATGTCGGAGGCGCTGCGCCGCCATCCCC
TCTACTTTGATGATCTCTACTGCGATCTGGTGGAAGCCGGTGAGCAATCCGGTGCGCTGGAGACCATCTACGACCGTATC
GCCACCTATCGGGAAAAGTCGGAAGCGCTCAAGTCGAAGATCAAGAAGGCGATGTTCTACCCCACCATGGTCATTCTGGT
CGCCATCGTGGTCACCTCCATCCTGCTGCTGTTCGTCATTCCGCAGTTCGAGGATATCTTCAAGAGCTTTGGTGCCGAGC
TGCCGGTGTTCACCCAGTTTGTTATCGGCATCTCCCGCTTTATGCAGAACTGGTGGTATGTCTTCTTTGGTGGCACGGCC
CTTGGCATCTTCCTTTACGTGCGGGCCTGGCGGGCCTCCCAGAAGGTGAAAGACAATACCGACAAGTTCGTCCTCACCAT
TCCGGTGGTCGGGATGATCCTGCACAAGGCGGCGATGGCTCGCTTTGCCCGTACTCTGTCAACCACCTTCTCCGCCGGTA
TTCCGCTGGTGGATGCGCTGATTTCGGCGGCTGGGGCCTCGGGTAACTATGTCTATCGCACCGCCGTCATGGCCATTCGC
AACGAGGTGGTGGCCGGTATGCAGATCAACGTGGCTATGCGCACCGTCGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCCGGTGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGATGATC
TGGTCGATGGCCTCACCAGCCTGCTGGAACCCCTCATCATGGTGGTGCTCGGGGTGCTGGTCGGCGGCATGGTTATCGCC
ATGTACCTGCCCATCTTCAAGCTTGGCGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T6QCE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

53.75

96.852

0.521
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

50.985

98.305

0.501
  pilC Vibrio cholerae strain A1552

46.883

97.094

0.455
  pilC Vibrio campbellii strain DS40M4

45.792

97.821

0.448
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

38

96.852

0.368