Detailed information NTG0735940

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NBH81_RS02255
• Genome accession: NZ_CP106828
• Coordinates: 456709..457581 (-)
• Length: 290 a.a.
• NCBI ID: WP_263085266.1
• Uniprot ID: -
• Organism: Aeromonas veronii strain jsyz553301
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 451709..462581

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NBH81_RS02230 (NBH81_02230)	secA	451841..454561 (+)	2721	WP_005336144.1	preprotein translocase subunit SecA	-
NBH81_RS02235 (NBH81_02235)	mutT	454636..455040 (+)	405	WP_019444787.1	8-oxo-dGTP diphosphatase MutT	-
NBH81_RS02240 (NBH81_02240)	yacG	455118..455312 (-)	195	WP_005336142.1	DNA gyrase inhibitor YacG	-
NBH81_RS02245 (NBH81_02245)	zapD	455322..456044 (-)	723	WP_005336141.1	cell division protein ZapD	-
NBH81_RS02250 (NBH81_02250)	coaE	456082..456696 (-)	615	WP_201938611.1	dephospho-CoA kinase	-
NBH81_RS02255 (NBH81_02255)	pilD	456709..457581 (-)	873	WP_263085266.1	A24 family peptidase	Machinery gene
NBH81_RS02260 (NBH81_02260)	pilC	457643..458884 (-)	1242	WP_005336136.1	type II secretion system F family protein	Machinery gene
NBH81_RS02265 (NBH81_02265)	pilB	459125..460831 (-)	1707	WP_005336134.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
NBH81_RS02270 (NBH81_02270)	-	460835..461278 (-)	444	WP_263085267.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
NBH81_RS02275 (NBH81_02275)	nadC	461594..462457 (-)	864	WP_263085268.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32183.42 Da
• Isoelectric Point: 6.5964

>NTDB_id=735940 NBH81_RS02255 WP_263085266.1 456709..457581(-) (pilD) [Aeromonas veronii strain jsyz553301]
MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFAPDEEATASERYNLMVPRSACPHCGHA
ITALENIPLLSWLWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQDLPIILLLSSL
VGAVIGISLIALHKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide

• Length: 873 bp

>NTDB_id=735940 NBH81_RS02255 WP_263085266.1 456709..457581(-) (pilD) [Aeromonas veronii strain jsyz553301]
ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCATGGCTCTACTTCTCGCTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGCTTCCTTAACGTAGTGATCCACCGCTTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAGTATCGCAGCTACTTCG
CCCCTGATGAGGAGGCCACTGCGTCAGAGCGCTACAACCTGATGGTCCCCCGCTCCGCATGTCCTCACTGTGGCCACGCC
ATCACTGCGCTGGAGAACATCCCGCTGCTGAGCTGGCTCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCCCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTGCTTACCGCCCTGCTCTCGGTGGCCGTTGCCATGGTCATAACCCCGGGCTGGGGCA
CGCTGGCCGCCCTGCTGCTGACCTGGGTGCTGGTCGCCCTCACCTTTATCGATCTCGACAAGATGTTGCTGCCCGACCAG
CTCACCCTGCCCCTGCTGTGGGGTGGGCTGCTGTTCAACCTGGCAGGCGGCTTCGTGCCGCTGGCGGATGCCGTGATCGG
TGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCTTTCAAGCTGCTCACCGGCAAAGAAGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGTTGGCAGGATCTGCCCATAATTCTGCTGCTCTCATCTTTG
GTCGGTGCCGTGATCGGCATCAGTCTGATCGCCTTGCACAAACACCATCAGGGCAAGCCCATTCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATCGCCCTGCTATGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.14	98.621	0.593
pilD	Vibrio campbellii strain DS40M4	56.098	98.966	0.555
pilD	Acinetobacter baumannii D1279779	53.597	95.862	0.514
pilD	Acinetobacter nosocomialis M2	53.597	95.862	0.514
pilD	Neisseria gonorrhoeae MS11	49.624	91.724	0.455