Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LLE30_RS12000 Genome accession   NZ_CP106765
Coordinates   2100684..2100980 (-) Length   98 a.a.
NCBI ID   WP_396954009.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10500     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2095684..2105980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE30_RS11025 (LLE30_11025) msrAB 2096048..2097616 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  LLE30_RS11030 (LLE30_11030) pilA 2097762..2099015 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  LLE30_RS11035 (LLE30_11035) - 2099286..2100065 (-) 780 WP_263060538.1 opacity family porin -
  LLE30_RS11995 pilE 2100478..2100687 (-) 210 WP_396954008.1 pilin Machinery gene
  LLE30_RS12000 pilE 2100684..2100980 (-) 297 WP_396954009.1 pilin Machinery gene
  LLE30_RS11045 (LLE30_11045) - 2101345..2101494 (-) 150 WP_263060532.1 hypothetical protein -
  LLE30_RS11055 (LLE30_11055) - 2101797..2102137 (-) 341 Protein_2133 pilin -
  LLE30_RS11060 (LLE30_11060) - 2102177..2102572 (-) 396 Protein_2134 pilin -
  LLE30_RS11065 (LLE30_11065) pilE 2103131..2103535 (-) 405 WP_229433471.1 pilin Machinery gene
  LLE30_RS11070 (LLE30_11070) lpxC 2103641..2104564 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  LLE30_RS11080 (LLE30_11080) - 2105066..2105434 (-) 369 Protein_2137 pilin -
  LLE30_RS11085 (LLE30_11085) - 2105475..2105813 (-) 339 Protein_2138 pilin -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10543.37 Da        Isoelectric Point: 9.9989

>NTDB_id=734661 LLE30_RS12000 WP_396954009.1 2100684..2100980(-) (pilE) [Neisseria gonorrhoeae strain 10500]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNNGEWPKDNTSAGVASPPPKS
KANMLKRLKLKTASLPPK

Nucleotide


Download         Length: 297 bp        

>NTDB_id=734661 LLE30_RS12000 WP_396954009.1 2100684..2100980(-) (pilE) [Neisseria gonorrhoeae strain 10500]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCCGCCTACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TTACCGAGTATTACCTGAATAACGGCGAATGGCCCAAAGACAACACTTCTGCCGGCGTGGCATCCCCCCCGCCGAAATCA
AAGGCAAATATGTTAAAGAGGTTGAAGTTAAAAACGGCGTCGTTACCGCCCAAATGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-81)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

81.72

94.898

0.776
  pilE Neisseria gonorrhoeae strain FA1090

97.333

76.531

0.745
  pilA2 Legionella pneumophila str. Paris

58.333

73.469

0.429
  pilA2 Legionella pneumophila strain ERS1305867

58.333

73.469

0.429
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

66.129

63.265

0.418
  comP Acinetobacter baylyi ADP1

67.241

59.184

0.398
  pilA Ralstonia pseudosolanacearum GMI1000

66.667

58.163

0.388
  pilA/pilA1 Eikenella corrodens VA1

58.73

64.286

0.378