Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LLE30_RS11065 Genome accession   NZ_CP106765
Coordinates   2103131..2103535 (-) Length   134 a.a.
NCBI ID   WP_229433471.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10500     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2098131..2108535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE30_RS11035 (LLE30_11035) - 2099286..2100065 (-) 780 WP_263060538.1 opacity family porin -
  LLE30_RS11995 pilE 2100478..2100687 (-) 210 WP_396954008.1 pilin Machinery gene
  LLE30_RS12000 pilE 2100684..2100980 (-) 297 WP_396954009.1 pilin Machinery gene
  LLE30_RS11045 (LLE30_11045) - 2101345..2101494 (-) 150 WP_263060532.1 hypothetical protein -
  LLE30_RS11055 (LLE30_11055) - 2101797..2102137 (-) 341 Protein_2133 pilin -
  LLE30_RS11060 (LLE30_11060) - 2102177..2102572 (-) 396 Protein_2134 pilin -
  LLE30_RS11065 (LLE30_11065) pilE 2103131..2103535 (-) 405 WP_229433471.1 pilin Machinery gene
  LLE30_RS11070 (LLE30_11070) lpxC 2103641..2104564 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  LLE30_RS11080 (LLE30_11080) - 2105066..2105434 (-) 369 Protein_2137 pilin -
  LLE30_RS11085 (LLE30_11085) - 2105475..2105813 (-) 339 Protein_2138 pilin -
  LLE30_RS11090 (LLE30_11090) - 2105854..2106069 (-) 216 Protein_2139 pilin -
  LLE30_RS11095 (LLE30_11095) - 2106442..2106573 (-) 132 WP_010356054.1 hypothetical protein -
  LLE30_RS11100 (LLE30_11100) - 2106655..2107343 (-) 689 Protein_2141 SprT family zinc-dependent metalloprotease -
  LLE30_RS11105 (LLE30_11105) - 2107340..2108083 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14683.41 Da        Isoelectric Point: 5.7736

>NTDB_id=734657 LLE30_RS11065 WP_229433471.1 2103131..2103535(-) (pilE) [Neisseria gonorrhoeae strain 10500]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGEWPEDNDKAGVASPDKIIGKYVKQVEVKNGVVTAEMASTGVNKEIQ
GKKLSLWAKRQDGSVKWFCGQPVTRNAKDNDTVANDATNAIETKHLPSTCRDLP

Nucleotide


Download         Length: 405 bp        

>NTDB_id=734657 LLE30_RS11065 WP_229433471.1 2103131..2103535(-) (pilE) [Neisseria gonorrhoeae strain 10500]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATCACGGCGAATGGCCGGAAGACAACGACAAGGCCGGCGTGGCATCCCCCGACAAAATCATAGGCA
AATATGTTAAGCAAGTTGAAGTCAAAAACGGCGTCGTCACCGCCGAAATGGCTTCAACCGGCGTAAACAAAGAAATCCAA
GGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCAACGC
CAAAGACAACGACACCGTTGCCAACGACGCCACCAACGCCATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGACCTGC
CGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

75.188

99.254

0.746
  pilE Neisseria gonorrhoeae MS11

70.588

100

0.716