Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NDM80_RS10925 Genome accession   NZ_CP106749
Coordinates   2080965..2081333 (-) Length   122 a.a.
NCBI ID   WP_396888856.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10723     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2075965..2086333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDM80_RS10905 (NDM80_10905) msrAB 2076367..2077935 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  NDM80_RS10910 (NDM80_10910) pilA 2078081..2079334 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  NDM80_RS10915 (NDM80_10915) - 2079472..2079630 (+) 159 WP_154236104.1 hypothetical protein -
  NDM80_RS10920 (NDM80_10920) - 2079604..2080281 (-) 678 WP_229930281.1 opacity family porin -
  NDM80_RS11845 pilE 2080816..2080992 (-) 177 WP_396888855.1 hypothetical protein Machinery gene
  NDM80_RS10925 (NDM80_10925) pilE 2080965..2081333 (-) 369 WP_396888856.1 pilin Machinery gene
  NDM80_RS10930 (NDM80_10930) - 2081702..2081845 (-) 144 WP_012503975.1 hypothetical protein -
  NDM80_RS10935 (NDM80_10935) - 2081950..2082030 (-) 81 Protein_2104 pilin -
  NDM80_RS10940 (NDM80_10940) pilE 2082148..2082561 (-) 414 WP_229930599.1 pilin Machinery gene
  NDM80_RS10945 (NDM80_10945) lpxC 2082667..2083590 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NDM80_RS11745 - 2084082..2084822 (-) 741 WP_396888858.1 pilin -
  NDM80_RS10965 (NDM80_10965) pilE 2084746..2085063 (-) 318 WP_003697861.1 pilin Machinery gene
  NDM80_RS10970 (NDM80_10970) - 2085436..2085567 (-) 132 WP_010356054.1 hypothetical protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13169.25 Da        Isoelectric Point: 9.8476

>NTDB_id=734405 NDM80_RS10925 WP_396888856.1 2080965..2081333(-) (pilE) [Neisseria gonorrhoeae strain 10723]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGKWPENNDSAGVASSSSIK
GKYVKEVEVKNGVVTAQMKSDGVNKEIKGKRLSLWAGVKTVR

Nucleotide


Download         Length: 369 bp        

>NTDB_id=734405 NDM80_RS10925 WP_396888856.1 2080965..2081333(-) (pilE) [Neisseria gonorrhoeae strain 10723]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCCGCCTACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TTACCGAGTATTACCTGAATCACGGCAAATGGCCGGAAAACAACGACTCTGCCGGCGTGGCATCTTCTTCATCAATCAAA
GGCAAATATGTTAAGGAAGTTGAAGTCAAAAACGGCGTCGTTACCGCCCAAATGAAATCAGACGGCGTAAACAAAGAAAT
CAAAGGCAAAAGACTCTCCCTGTGGGCAGGCGTGAAAACGGTTCGGTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

91.379

95.082

0.869
  pilE Neisseria gonorrhoeae strain FA1090

87.069

95.082

0.828
  pilA Acinetobacter nosocomialis M2

38.843

99.18

0.385
  pilA Haemophilus influenzae 86-028NP

44.66

84.426

0.377
  pilA2 Legionella pneumophila str. Paris

48.913

75.41

0.369
  pilA2 Legionella pneumophila strain ERS1305867

48.913

75.41

0.369
  pilA/pilA1 Eikenella corrodens VA1

51.724

71.311

0.369
  comP Acinetobacter baylyi ADP1

51.724

71.311

0.369