Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NDM80_RS10940 Genome accession   NZ_CP106749
Coordinates   2082148..2082561 (-) Length   137 a.a.
NCBI ID   WP_229930599.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10723     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2077148..2087561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDM80_RS10910 (NDM80_10910) pilA 2078081..2079334 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  NDM80_RS10915 (NDM80_10915) - 2079472..2079630 (+) 159 WP_154236104.1 hypothetical protein -
  NDM80_RS10920 (NDM80_10920) - 2079604..2080281 (-) 678 WP_229930281.1 opacity family porin -
  NDM80_RS11845 pilE 2080816..2080992 (-) 177 WP_396888855.1 hypothetical protein Machinery gene
  NDM80_RS10925 (NDM80_10925) pilE 2080965..2081333 (-) 369 WP_396888856.1 pilin Machinery gene
  NDM80_RS10930 (NDM80_10930) - 2081702..2081845 (-) 144 WP_012503975.1 hypothetical protein -
  NDM80_RS10935 (NDM80_10935) - 2081950..2082030 (-) 81 Protein_2104 pilin -
  NDM80_RS10940 (NDM80_10940) pilE 2082148..2082561 (-) 414 WP_229930599.1 pilin Machinery gene
  NDM80_RS10945 (NDM80_10945) lpxC 2082667..2083590 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NDM80_RS11745 - 2084082..2084822 (-) 741 WP_396888858.1 pilin -
  NDM80_RS10965 (NDM80_10965) pilE 2084746..2085063 (-) 318 WP_003697861.1 pilin Machinery gene
  NDM80_RS10970 (NDM80_10970) - 2085436..2085567 (-) 132 WP_010356054.1 hypothetical protein -
  NDM80_RS10975 (NDM80_10975) - 2085649..2086337 (-) 689 Protein_2110 SprT family zinc-dependent metalloprotease -
  NDM80_RS10980 (NDM80_10980) - 2086334..2087077 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14989.78 Da        Isoelectric Point: 7.1351

>NTDB_id=734406 NDM80_RS10940 WP_229930599.1 2082148..2082561(-) (pilE) [Neisseria gonorrhoeae strain 10723]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGKWPEDNDKAGVASPDKIIGKYVKQVEVKNGVVTAEMASTGVNKEIQ
GKKLSLWAKRQDGSVKWFCGQPVKRNAKDNDTVADDATNAIETKHLPSTCRDPFSAS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=734406 NDM80_RS10940 WP_229930599.1 2082148..2082561(-) (pilE) [Neisseria gonorrhoeae strain 10723]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATCACGGCAAATGGCCGGAAGACAACGACAAGGCCGGCGTGGCATCCCCCGACAAAATCATAGGCA
AATATGTTAAGCAAGTTGAAGTCAAAAACGGCGTCGTCACCGCCGAAATGGCTTCAACCGGCGTAAACAAAGAAATCCAA
GGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCAACGC
CAAAGACAACGACACCGTTGCCGACGACGCCACCAACGCCATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGACCCGT
TCTCTGCTAGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.188

100

0.737
  pilE Neisseria gonorrhoeae MS11

69.565

100

0.701