Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NDM80_RS11845 Genome accession   NZ_CP106749
Coordinates   2080816..2080992 (-) Length   58 a.a.
NCBI ID   WP_396888855.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10723     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2075816..2085992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDM80_RS10905 (NDM80_10905) msrAB 2076367..2077935 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  NDM80_RS10910 (NDM80_10910) pilA 2078081..2079334 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  NDM80_RS10915 (NDM80_10915) - 2079472..2079630 (+) 159 WP_154236104.1 hypothetical protein -
  NDM80_RS10920 (NDM80_10920) - 2079604..2080281 (-) 678 WP_229930281.1 opacity family porin -
  NDM80_RS11845 pilE 2080816..2080992 (-) 177 WP_396888855.1 hypothetical protein Machinery gene
  NDM80_RS10925 (NDM80_10925) pilE 2080965..2081333 (-) 369 WP_396888856.1 pilin Machinery gene
  NDM80_RS10930 (NDM80_10930) - 2081702..2081845 (-) 144 WP_012503975.1 hypothetical protein -
  NDM80_RS10935 (NDM80_10935) - 2081950..2082030 (-) 81 Protein_2104 pilin -
  NDM80_RS10940 (NDM80_10940) pilE 2082148..2082561 (-) 414 WP_229930599.1 pilin Machinery gene
  NDM80_RS10945 (NDM80_10945) lpxC 2082667..2083590 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NDM80_RS11745 - 2084082..2084822 (-) 741 WP_396888858.1 pilin -
  NDM80_RS10965 (NDM80_10965) pilE 2084746..2085063 (-) 318 WP_003697861.1 pilin Machinery gene
  NDM80_RS10970 (NDM80_10970) - 2085436..2085567 (-) 132 WP_010356054.1 hypothetical protein -

Sequence

Protein


Download         Length: 58 a.a.        Molecular weight: 6238.93 Da        Isoelectric Point: 8.5457

>NTDB_id=734410 NDM80_RS11845 WP_396888855.1 2080816..2080992(-) (pilE) [Neisseria gonorrhoeae strain 10723]
MGRRENGSVKWFCGQPVKRADDAVKAGTDAVTADTTGKDKIETKHLPSTCRDTSSDAK

Nucleotide


Download         Length: 177 bp        

>NTDB_id=734410 NDM80_RS11845 WP_396888855.1 2080816..2080992(-) (pilE) [Neisseria gonorrhoeae strain 10723]
GTGGGCAGGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGCCGACGACGCCGTCAAAGCCGG
CACCGACGCCGTCACCGCCGACACCACCGGCAAAGACAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATACGT
CATCTGATGCCAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

68.421

98.276

0.672
  pilE Neisseria gonorrhoeae strain FA1090

55.556

93.103

0.517