Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   N0O74_RS04775 Genome accession   NZ_CP104863
Coordinates   1081556..1082815 (-) Length   419 a.a.
NCBI ID   WP_076739181.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain CW002SM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1076556..1087815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0O74_RS04750 (N0O74_04750) - 1076990..1077667 (+) 678 WP_005410804.1 response regulator transcription factor -
  N0O74_RS04755 (N0O74_04755) - 1077672..1079000 (+) 1329 WP_005410803.1 HAMP domain-containing sensor histidine kinase -
  N0O74_RS04760 (N0O74_04760) - 1079483..1079869 (+) 387 WP_076739183.1 hypothetical protein -
  N0O74_RS04765 (N0O74_04765) coaE 1080062..1080673 (-) 612 WP_171969077.1 dephospho-CoA kinase -
  N0O74_RS04770 (N0O74_04770) - 1080685..1081548 (-) 864 WP_005410800.1 A24 family peptidase -
  N0O74_RS04775 (N0O74_04775) pilC 1081556..1082815 (-) 1260 WP_076739181.1 type II secretion system F family protein Machinery gene
  N0O74_RS04780 (N0O74_04780) pilA 1083173..1083604 (+) 432 WP_076739180.1 pilin Machinery gene
  N0O74_RS04785 (N0O74_04785) - 1083713..1084135 (+) 423 WP_076739179.1 pilin -
  N0O74_RS04790 (N0O74_04790) pilB 1084201..1085934 (+) 1734 WP_076739178.1 type IV-A pilus assembly ATPase PilB Machinery gene
  N0O74_RS04795 (N0O74_04795) pilR 1086059..1087432 (-) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45868.38 Da        Isoelectric Point: 10.1819

>NTDB_id=732831 N0O74_RS04775 WP_076739181.1 1081556..1082815(-) (pilC) [Stenotrophomonas maltophilia strain CW002SM]
MSVSRSAIKKEPVARATTELQPFVWEGTDKRGVKMKGEQVAKNANLLRAELRRQGINPGTVKPKPKPLFGAAGSKVMPKD
IAFFSRQMATMMKSGVPIVSALDIIASGHKNPRMKKMVDTIRTDIEGGSSMYEAVSKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPAMVVVVALLVSAIMLIFVVPQFEEVFRGFGAELPAFTQMIVNLSRFMVSWWWL
MAIVAVGAVVAFTMAYKRSPKMQHTMDRLILRVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
GVLRMRDDVSVGYPVNMAMKQLNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPMIMVFIGVVV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=732831 N0O74_RS04775 WP_076739181.1 1081556..1082815(-) (pilC) [Stenotrophomonas maltophilia strain CW002SM]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCCGTGGCCCGCGCCACCACGGAGCTGCAACCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTAAAGATGAAAGGGGAGCAAGTCGCCAAGAACGCCAACCTGCTGCGTGCGGAACTGCGGCGCC
AGGGCATCAACCCCGGCACGGTAAAGCCCAAGCCCAAGCCACTGTTCGGAGCAGCCGGCAGCAAGGTTATGCCGAAGGAC
ATTGCCTTCTTCAGCCGTCAGATGGCCACGATGATGAAGTCCGGTGTGCCGATCGTGTCGGCGCTGGACATCATCGCCAG
CGGGCACAAGAACCCGCGGATGAAGAAGATGGTGGACACCATCCGCACCGACATTGAGGGCGGATCCTCGATGTACGAGG
CCGTCAGCAAGCACCCGGTGCAGTTCGATGAGCTGTACCGCAACCTGGTGCGGGCTGGCGAAGGCGCCGGTGTGCTGGAA
ACCGTGCTGGACACGGTGGCCACCTACAAGGAAAACATCGAAGCGCTGAAGGGCAAGATCAAGAAGGCACTGTTCTACCC
TGCGATGGTGGTAGTGGTGGCGCTACTGGTCAGTGCCATCATGCTGATCTTCGTCGTACCGCAGTTTGAGGAAGTGTTCC
GCGGTTTCGGCGCGGAGCTACCTGCGTTTACCCAGATGATCGTGAATCTGTCACGCTTCATGGTCTCTTGGTGGTGGTTG
ATGGCGATCGTGGCAGTTGGCGCCGTCGTCGCATTCACCATGGCCTACAAACGATCACCCAAGATGCAGCACACCATGGA
CCGCCTGATCTTGAGGGTGCCGGTGATCGGGCAGATCATGCACAACAGCTCGATTGCCCGTTTCGCCCGAACGACCGCCG
TGACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCCCTGGGCATCGTGGCCGGCGCCACCGGCAACAAAGTCTATGAGGAA
GGCGTACTGCGAATGAGGGACGACGTCTCGGTCGGCTACCCGGTCAACATGGCCATGAAACAGCTGAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCCGGCGCCCTGGACGCCATGCTGTTCAAGGTGGCCGAGTATTATG
AGCAGGAGGTCAATAATGCCGTTGACGCCCTGAGCAGCCTGCTCGAACCGATGATCATGGTCTTCATCGGTGTCGTCGTT
GGCGGTATGGTCATCGGCATGTATCTGCCCATCTTCAAACTCGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.545

94.511

0.516
  pilC Legionella pneumophila strain ERS1305867

52.632

95.227

0.501
  pilC Acinetobacter baylyi ADP1

50.246

96.897

0.487
  pilC Acinetobacter baumannii D1279779

50.63

94.749

0.48
  pilG Neisseria gonorrhoeae MS11

44.888

95.704

0.43
  pilG Neisseria meningitidis 44/76-A

44.638

95.704

0.427
  pilC Vibrio campbellii strain DS40M4

41.397

95.704

0.396
  pilC Vibrio cholerae strain A1552

40.887

96.897

0.396