Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   N5P16_RS00330 Genome accession   NZ_CP104734
Coordinates   77762..78988 (+) Length   408 a.a.
NCBI ID   WP_004920476.1    Uniprot ID   Q6FF46
Organism   Acinetobacter baylyi strain JAT2044     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 72762..83988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P16_RS00295 (N5P16_00295) rimP 73016..73540 (-) 525 WP_004920465.1 ribosome maturation factor RimP -
  N5P16_RS00315 (N5P16_00315) secG 74620..74949 (-) 330 WP_004920467.1 preprotein translocase subunit SecG -
  N5P16_RS00320 (N5P16_00320) tpiA 74959..75756 (-) 798 WP_004920470.1 triose-phosphate isomerase -
  N5P16_RS00325 (N5P16_00325) pilB 76021..77733 (+) 1713 WP_004920473.1 type IV-A pilus assembly ATPase PilB Machinery gene
  N5P16_RS00330 (N5P16_00330) pilC 77762..78988 (+) 1227 WP_004920476.1 type II secretion system F family protein Machinery gene
  N5P16_RS00335 (N5P16_00335) pilD 78988..79848 (+) 861 WP_004920478.1 prepilin peptidase Machinery gene
  N5P16_RS00340 (N5P16_00340) coaE 79854..80441 (+) 588 WP_004920482.1 dephospho-CoA kinase -
  N5P16_RS00345 (N5P16_00345) - 80438..81355 (-) 918 WP_004920488.1 DMT family transporter -
  N5P16_RS00350 (N5P16_00350) rlmB 81396..82142 (-) 747 WP_004920490.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  N5P16_RS00355 (N5P16_00355) - 82242..82568 (-) 327 WP_004920494.1 pyrimidine/purine nucleoside phosphorylase -
  N5P16_RS00360 (N5P16_00360) - 82647..83954 (-) 1308 WP_004920495.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45156.56 Da        Isoelectric Point: 9.9700

>NTDB_id=731674 N5P16_RS00330 WP_004920476.1 77762..78988(+) (pilC) [Acinetobacter baylyi strain JAT2044]
MAAKKTQVMPVFAYEGVDRKGIKLKGELPARNMALAKVTLRKQGITIRTIREKRKNIFEGLLKKKVKPLDIAIFTRQLAT
MMKAGVPLVQAFEIVAEGLENPAMRDVVLGLKNEVEGGNTFAGALRKYPQYFDNLFCSLIESGEQSGSLEIMLDRVAVYK
EKSEVLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFKDLFTSFGADLPAFTQLVVNMSNWMQDYWFILILVIGAAIA
GFLEARKRSKRFRDQLDRLVLRLPIVGDLVYKAIIARYSRTLATTFAAGVPLIDALASTAGATNNTVYEQAVLKIREDVS
TGQQLNFAMRVSNRFPTMAIQMVAIGEESGALDEMLDKVANYYESEVDHAVDGLTSMMEPLIMAILGILVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=731674 N5P16_RS00330 WP_004920476.1 77762..78988(+) (pilC) [Acinetobacter baylyi strain JAT2044]
ATGGCAGCAAAAAAAACGCAAGTAATGCCAGTATTTGCTTATGAAGGTGTCGACCGTAAAGGCATCAAGTTAAAAGGGGA
ATTACCTGCACGCAATATGGCATTGGCCAAAGTCACTTTGCGAAAACAAGGCATTACGATTCGCACCATACGTGAAAAAC
GTAAAAATATTTTTGAAGGTTTACTTAAAAAGAAAGTCAAACCACTCGATATTGCCATTTTTACTCGTCAACTTGCCACC
ATGATGAAGGCAGGTGTTCCATTGGTACAAGCATTTGAAATTGTAGCAGAAGGGTTAGAAAACCCAGCCATGCGCGATGT
AGTGCTTGGCTTAAAAAATGAAGTTGAAGGCGGCAATACCTTTGCTGGTGCTTTACGCAAGTATCCCCAGTATTTTGATA
ACTTATTCTGTTCCCTCATTGAATCAGGGGAGCAGTCGGGTTCTCTTGAAATTATGCTAGACCGTGTGGCCGTCTATAAA
GAAAAAAGTGAAGTTCTTAAGCAAAAAATTAAAAAAGCCATGAAATATCCTGCCACCGTCATTGTAGTTGCGATTGTGGT
AACCATTATTTTGATGGTAAAGGTTGTCCCTGTATTTAAAGACTTATTTACATCATTTGGTGCAGATTTACCTGCTTTTA
CGCAACTGGTGGTCAATATGTCAAACTGGATGCAAGATTACTGGTTTATTTTAATTCTGGTGATTGGGGCTGCAATTGCA
GGTTTCCTGGAAGCTAGAAAACGCAGTAAACGCTTTCGCGATCAACTTGATCGTTTGGTTCTCCGATTGCCCATTGTTGG
TGATCTGGTCTACAAGGCAATCATTGCCCGATACAGTCGCACTTTGGCCACAACTTTTGCTGCAGGTGTACCACTCATTG
ATGCGCTGGCCTCTACCGCAGGTGCCACGAATAATACTGTTTATGAACAGGCAGTGCTTAAAATCCGAGAAGATGTATCA
ACTGGACAACAACTTAACTTCGCTATGCGCGTATCCAATCGTTTTCCAACCATGGCTATCCAAATGGTAGCGATTGGTGA
AGAATCTGGAGCACTCGATGAAATGCTGGATAAAGTCGCAAATTATTATGAAAGTGAAGTCGATCATGCGGTCGATGGCC
TTACCTCCATGATGGAACCGCTGATTATGGCGATTTTGGGCATTTTAGTCGGTGGACTGGTTATTGCAATGTATCTTCCA
ATTTTCCAAATGGGCTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6FF46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

100

100

1
  pilC Acinetobacter baumannii D1279779

85.784

100

0.858
  pilC Pseudomonas stutzeri DSM 10701

60.688

99.755

0.605
  pilC Legionella pneumophila strain ERS1305867

53.086

99.265

0.527
  pilG Neisseria gonorrhoeae MS11

45.363

97.794

0.444
  pilG Neisseria meningitidis 44/76-A

45.113

97.794

0.441
  pilC Vibrio cholerae strain A1552

42.015

99.755

0.419
  pilC Vibrio campbellii strain DS40M4

42.462

97.549

0.414
  pilC Thermus thermophilus HB27

37.905

98.284

0.373