NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	N5P16_RS00335	Genome accession	NZ_CP104734
Coordinates	78988..79848 (+)	Length	286 a.a.
NCBI ID	WP_004920478.1	Uniprot ID	A0A7G2SJN3
Organism	Acinetobacter baylyi strain JAT2044
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 73988..84848

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N5P16_RS00315 (N5P16_00315)	secG	74620..74949 (-)	330	WP_004920467.1	preprotein translocase subunit SecG	-
N5P16_RS00320 (N5P16_00320)	tpiA	74959..75756 (-)	798	WP_004920470.1	triose-phosphate isomerase	-
N5P16_RS00325 (N5P16_00325)	pilB	76021..77733 (+)	1713	WP_004920473.1	type IV-A pilus assembly ATPase PilB	Machinery gene
N5P16_RS00330 (N5P16_00330)	pilC	77762..78988 (+)	1227	WP_004920476.1	type II secretion system F family protein	Machinery gene
N5P16_RS00335 (N5P16_00335)	pilD	78988..79848 (+)	861	WP_004920478.1	prepilin peptidase	Machinery gene
N5P16_RS00340 (N5P16_00340)	coaE	79854..80441 (+)	588	WP_004920482.1	dephospho-CoA kinase	-
N5P16_RS00345 (N5P16_00345)	-	80438..81355 (-)	918	WP_004920488.1	DMT family transporter	-
N5P16_RS00350 (N5P16_00350)	rlmB	81396..82142 (-)	747	WP_004920490.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
N5P16_RS00355 (N5P16_00355)	-	82242..82568 (-)	327	WP_004920494.1	pyrimidine/purine nucleoside phosphorylase	-
N5P16_RS00360 (N5P16_00360)	-	82647..83954 (-)	1308	WP_004920495.1	tetratricopeptide repeat protein	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32322.80 Da Isoelectric Point: 7.9704

                                >NTDB_id=731675 N5P16_RS00335 WP_004920478.1 78988..79848(+) (pilD) [Acinetobacter baylyi strain JAT2044]

MSDFIRYFSENLTALYCLVGILSLCIGSFLNVVIFRTPKMMEQEWKQECQMILHPDQPLIESEKLTLSYPASTCPHCHTP

IRWYQNIPLISWLFLRGKCQSCKASISSRYPLVELLTMLCSLLVVVVFGATLHMLFGLVLTWILIALTFIDFDTQLLPDR

FTLTLAGLGLAVNSFTIYVSPTQAIWGYIVGFLCLWIVYYIFKLITKKEGMGYGDFKLLAALGAWMGPMMLPLIVLLSSC

VGAIIGIILLRKRQENQPFAFGPYIAIAGWIAFLWGDQIMKVYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=731675 N5P16_RS00335 WP_004920478.1 78988..79848(+) (pilD) [Acinetobacter baylyi strain JAT2044]

ATGTCTGACTTCATTCGTTATTTTTCTGAAAATTTAACTGCTTTATATTGTCTTGTAGGTATTTTAAGTCTATGTATAGG

AAGCTTTCTCAATGTTGTGATTTTTCGCACACCCAAAATGATGGAACAAGAATGGAAACAAGAATGTCAGATGATATTAC

ATCCAGATCAGCCACTCATCGAAAGTGAAAAGTTAACGCTCAGTTACCCTGCTTCAACTTGTCCACACTGTCATACTCCT

ATCCGCTGGTATCAAAATATTCCATTAATCAGTTGGTTATTTCTACGTGGTAAATGTCAGTCATGCAAAGCTTCCATCAG

TAGTCGTTATCCGCTGGTTGAGTTACTGACCATGCTTTGTTCGCTGCTGGTGGTTGTGGTATTTGGTGCGACACTACACA

TGCTTTTCGGTTTAGTGCTGACCTGGATATTGATTGCGCTGACCTTTATTGACTTTGATACCCAGCTTCTACCTGATCGT

TTTACCCTGACACTTGCAGGATTAGGGTTAGCTGTAAATAGCTTCACAATCTATGTTTCCCCCACTCAAGCGATTTGGGG

TTATATTGTGGGCTTCCTTTGCCTCTGGATTGTGTATTACATTTTTAAGCTGATTACCAAAAAAGAAGGCATGGGCTATG

GCGATTTTAAATTACTCGCGGCTCTAGGAGCATGGATGGGACCCATGATGCTGCCATTGATCGTGCTCTTGTCATCCTGC

GTCGGCGCCATTATTGGTATCATTTTGCTACGTAAGCGTCAGGAAAATCAGCCTTTTGCATTTGGTCCCTATATCGCGAT

TGCAGGTTGGATTGCATTTTTGTGGGGCGATCAGATTATGAAAGTCTACCTGGGAGGCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A7G2SJN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter nosocomialis M2	78.322	100	0.783
pilD	Acinetobacter baumannii D1279779	77.273	100	0.773
pilD	Vibrio cholerae strain A1552	55.351	94.755	0.524
pilD	Vibrio campbellii strain DS40M4	53.008	93.007	0.493
pilD	Neisseria gonorrhoeae MS11	46.241	93.007	0.43

Detailed information NTG0731675