Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GZK95_RS00220 Genome accession   NZ_AP019654
Coordinates   49221..50336 (+) Length   371 a.a.
NCBI ID   WP_075714835.1    Uniprot ID   -
Organism   Vibrio panuliri strain JCM 19500     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 44221..55336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZK95_RS00200 rsmB 45682..46962 (-) 1281 WP_075714839.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  GZK95_RS00205 fmt 47069..48016 (-) 948 WP_075707104.1 methionyl-tRNA formyltransferase -
  GZK95_RS00210 def 48049..48561 (-) 513 WP_075707102.1 peptide deformylase -
  GZK95_RS00215 - 48733..49224 (+) 492 WP_075714837.1 hypothetical protein -
  GZK95_RS00220 dprA 49221..50336 (+) 1116 WP_075714835.1 DNA-processing protein DprA Machinery gene
  GZK95_RS00225 - 50339..50815 (+) 477 WP_075707096.1 DUF494 family protein -
  GZK95_RS00230 - 50839..51423 (+) 585 WP_075713724.1 type I DNA topoisomerase -
  GZK95_RS00235 - 51469..52590 (-) 1122 WP_075713726.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  GZK95_RS00240 purE 52594..53079 (-) 486 WP_075707090.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  GZK95_RS00245 - 53400..53957 (+) 558 WP_075713728.1 L-threonylcarbamoyladenylate synthase -
  GZK95_RS00250 hemF 53978..54898 (+) 921 WP_075713730.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40072.04 Da        Isoelectric Point: 7.1337

>NTDB_id=73070 GZK95_RS00220 WP_075714835.1 49221..50336(+) (dprA) [Vibrio panuliri strain JCM 19500]
MSSDLLRAWLTLYFTPRLGAKGLHTLLAKASPQALVSLDHQALQALGLTASQAAFILMDKHQYVEQCIDWRDSADNHHII
TLDDPLYPPLLAQLSIPPPVLFVKGEPSVLTTPQVALVGSRHATIDGLRNATYFAGELAQQGLTITSGLALGVDGHAHDG
ALRQGGSTIAVLGCGLNTVYPARHKRLAQRIENQGALVSEFHPAILPKSANFPRRNRIISGLSLGVLVVEATERSGSLIT
ARYAAEQGRDVFALPGSIHSSQAKGCNQLIKQGACLIQTVEDIVNEIETLLRWSNHYMEKISPNGPIEKEPKEQLPFADL
LANVGTQVTPVDILAQRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=73070 GZK95_RS00220 WP_075714835.1 49221..50336(+) (dprA) [Vibrio panuliri strain JCM 19500]
ATGAGCAGTGACCTCCTTCGCGCTTGGTTAACCCTCTATTTCACACCTCGCCTCGGCGCGAAAGGGTTGCACACGTTATT
AGCCAAAGCGAGTCCACAGGCTTTGGTTTCTTTGGATCACCAAGCGCTACAAGCTCTTGGTCTAACAGCATCACAAGCGG
CTTTTATTCTGATGGATAAACACCAATATGTGGAGCAGTGCATCGATTGGCGAGATAGCGCAGACAATCACCACATTATT
ACGCTAGACGATCCCCTTTACCCGCCGCTGCTTGCCCAGTTATCCATACCGCCACCCGTGTTGTTTGTTAAAGGTGAGCC
ATCAGTATTGACCACGCCTCAAGTCGCGCTGGTGGGGAGTCGTCATGCCACCATTGATGGTTTACGAAATGCGACCTATT
TTGCGGGTGAGTTAGCGCAGCAGGGTTTAACCATCACGAGTGGATTAGCGCTGGGCGTAGATGGTCATGCTCATGATGGG
GCATTGCGACAAGGAGGCTCGACAATTGCGGTGCTAGGATGTGGATTGAATACTGTTTACCCTGCGCGTCATAAGCGTCT
TGCGCAAAGGATAGAGAATCAAGGGGCATTGGTTTCAGAGTTTCACCCCGCAATTTTGCCAAAATCGGCTAACTTTCCTC
GTCGTAATCGCATTATTAGCGGTTTGTCGTTGGGAGTTTTGGTGGTGGAAGCCACCGAGCGAAGTGGGTCCCTTATTACC
GCTCGATATGCCGCTGAACAAGGGCGTGATGTGTTTGCGCTGCCGGGTTCGATTCACTCCTCACAAGCCAAAGGGTGTAA
CCAGTTGATAAAACAAGGAGCTTGTTTAATCCAAACCGTTGAAGACATCGTAAATGAAATAGAGACGTTGCTGCGTTGGT
CTAATCATTATATGGAAAAAATAAGCCCAAATGGCCCGATTGAAAAAGAGCCGAAAGAACAATTGCCATTTGCTGATCTT
CTAGCTAACGTAGGCACACAAGTGACACCGGTTGATATTTTGGCACAGAGGACCAATATTCCTGTGCAGGAAGTCATGAT
GCAGCTGTTAGAGTTAGAGCTCTCAGGGCATGTTGTTGCGGTTTCTGGTGGTTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-278)

DprA winged helix domain (DprA_WH)

(318-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

61.957

99.191

0.615
  dprA Vibrio cholerae strain A1552

55.968

100

0.569
  dprA Glaesserella parasuis strain SC1401

45.38

99.191

0.45
  dprA Haemophilus influenzae Rd KW20

44.669

93.531

0.418
  dprA Neisseria meningitidis strain C311

38.287

100

0.41
  dprA Neisseria meningitidis MC58

38.287

100

0.41
  dprA Neisseria gonorrhoeae MS11

37.101

100

0.407
  dprA Neisseria gonorrhoeae strain FA1090

36.855

100

0.404
  dprA Legionella pneumophila strain ERS1305867

44.444

89.757

0.399
  dprA Acinetobacter baylyi ADP1

40.643

92.183

0.375
  dprA Acinetobacter baumannii D1279779

45.734

78.976

0.361

Multiple sequence alignment