Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   N4T05_RS09735 Genome accession   NZ_CP104559
Coordinates   1969955..1970383 (-) Length   142 a.a.
NCBI ID   WP_124760935.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA2107     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1962688..1985408 1969955..1970383 within 0


Gene organization within MGE regions


Location: 1962688..1985408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4T05_RS09645 (N4T05_09645) rinB 1962784..1962957 (-) 174 WP_024937262.1 transcriptional activator RinB -
  N4T05_RS09650 (N4T05_09650) - 1962950..1963186 (-) 237 WP_000483477.1 hypothetical protein -
  N4T05_RS09655 (N4T05_09655) - 1963211..1963444 (-) 234 WP_031905176.1 DUF1381 domain-containing protein -
  N4T05_RS09660 (N4T05_09660) - 1963613..1963858 (-) 246 WP_031905177.1 hypothetical protein -
  N4T05_RS09665 (N4T05_09665) - 1963895..1964428 (-) 534 WP_048525261.1 dUTP diphosphatase -
  N4T05_RS09670 (N4T05_09670) - 1964421..1964669 (-) 249 WP_031905179.1 DUF1024 family protein -
  N4T05_RS09675 (N4T05_09675) - 1964662..1964971 (-) 310 Protein_1867 hypothetical protein -
  N4T05_RS09680 (N4T05_09680) - 1964968..1965315 (-) 348 WP_000982695.1 YopX family protein -
  N4T05_RS09685 (N4T05_09685) - 1965379..1965627 (-) 249 WP_001126839.1 phi PVL orf 51-like protein -
  N4T05_RS09690 (N4T05_09690) - 1965628..1965987 (-) 360 Protein_1870 SA1788 family PVL leukocidin-associated protein -
  N4T05_RS09695 (N4T05_09695) - 1965988..1966173 (-) 186 WP_001187249.1 DUF3113 family protein -
  N4T05_RS09700 (N4T05_09700) - 1966178..1966582 (-) 405 WP_000049776.1 DUF1064 domain-containing protein -
  N4T05_RS09705 (N4T05_09705) - 1966592..1966813 (-) 222 WP_001123680.1 DUF3269 family protein -
  N4T05_RS09710 (N4T05_09710) - 1966826..1966987 (-) 162 WP_000237153.1 hypothetical protein -
  N4T05_RS09715 (N4T05_09715) - 1966981..1967760 (-) 780 WP_000803056.1 ATP-binding protein -
  N4T05_RS09720 (N4T05_09720) - 1967772..1968515 (-) 744 WP_000139436.1 conserved phage C-terminal domain-containing protein -
  N4T05_RS09725 (N4T05_09725) - 1968508..1969272 (-) 765 WP_000240900.1 AP2 domain-containing protein -
  N4T05_RS09730 (N4T05_09730) - 1969272..1969941 (-) 670 Protein_1878 putative HNHc nuclease -
  N4T05_RS09735 (N4T05_09735) ssbA 1969955..1970383 (-) 429 WP_124760935.1 single-stranded DNA-binding protein Machinery gene
  N4T05_RS09740 (N4T05_09740) - 1970383..1971006 (-) 624 WP_000139720.1 DUF1071 domain-containing protein -
  N4T05_RS09745 (N4T05_09745) - 1970999..1971220 (-) 222 WP_001077280.1 DUF2483 family protein -
  N4T05_RS09750 (N4T05_09750) - 1971230..1971490 (-) 261 WP_000291090.1 DUF1108 family protein -
  N4T05_RS09755 (N4T05_09755) - 1971587..1971748 (-) 162 WP_000066011.1 DUF1270 domain-containing protein -
  N4T05_RS09760 (N4T05_09760) - 1971741..1971962 (-) 222 WP_000594789.1 hypothetical protein -
  N4T05_RS09765 (N4T05_09765) - 1972033..1972263 (+) 231 WP_000395455.1 hypothetical protein -
  N4T05_RS09770 (N4T05_09770) - 1972445..1972639 (-) 195 WP_001148857.1 hypothetical protein -
  N4T05_RS09775 (N4T05_09775) - 1972656..1973420 (-) 765 WP_031880731.1 phage antirepressor KilAC domain-containing protein -
  N4T05_RS09780 (N4T05_09780) - 1973420..1973614 (-) 195 WP_000108121.1 helix-turn-helix transcriptional regulator -
  N4T05_RS09785 (N4T05_09785) - 1973877..1974209 (+) 333 WP_001055142.1 helix-turn-helix domain-containing protein -
  N4T05_RS09790 (N4T05_09790) - 1974226..1974900 (+) 675 WP_000775189.1 ImmA/IrrE family metallo-endopeptidase -
  N4T05_RS09795 (N4T05_09795) - 1974929..1975654 (+) 726 WP_000661378.1 PH domain-containing protein -
  N4T05_RS09800 (N4T05_09800) - 1975871..1976803 (+) 933 WP_000392183.1 hypothetical protein -
  N4T05_RS09805 (N4T05_09805) - 1976783..1976962 (-) 180 WP_000337827.1 hypothetical protein -
  N4T05_RS09810 (N4T05_09810) - 1977075..1978121 (+) 1047 WP_001145722.1 tyrosine-type recombinase/integrase -
  N4T05_RS09815 (N4T05_09815) yfkAB 1978166..1979311 (+) 1146 WP_001622132.1 radical SAM/CxCxxxxC motif protein YfkAB -
  N4T05_RS09820 (N4T05_09820) - 1979574..1980104 (-) 531 WP_000184383.1 acyl-CoA thioesterase -
  N4T05_RS09825 (N4T05_09825) - 1980194..1981441 (-) 1248 WP_000656302.1 aminopeptidase -
  N4T05_RS09830 (N4T05_09830) - 1981453..1981653 (-) 201 WP_000180459.1 DUF1128 family protein -
  N4T05_RS09835 (N4T05_09835) - 1981800..1982264 (+) 465 WP_000228668.1 low molecular weight protein-tyrosine-phosphatase -
  N4T05_RS09840 (N4T05_09840) - 1982271..1982546 (+) 276 WP_000428172.1 YtxH domain-containing protein -
  N4T05_RS09845 (N4T05_09845) - 1982824..1984041 (+) 1218 WP_000037083.1 YihY/virulence factor BrkB family protein -
  N4T05_RS09850 (N4T05_09850) vraR 1984154..1984783 (-) 630 WP_000153535.1 two-component system response regulator VraR Regulator

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16028.57 Da        Isoelectric Point: 6.9791

>NTDB_id=730575 N4T05_RS09735 WP_124760935.1 1969955..1970383(-) (ssbA) [Staphylococcus aureus strain SA2107]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVYGRLQSR
SYENKDGQRVFVTEVAADSVQFLEPKNSNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=730575 N4T05_RS09735 WP_124760935.1 1969955..1970383(-) (ssbA) [Staphylococcus aureus strain SA2107]
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTTATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTGTTTGTTACAGAAGTAGCAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAGCAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.14

100

0.704
  ssb Latilactobacillus sakei subsp. sakei 23K

49.412

100

0.592
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

74.648

0.437
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.958

100

0.423
  ssbA Streptococcus mutans UA159

40.845

100

0.408
  ssbB/cilA Streptococcus mitis NCTC 12261

40.141

100

0.401
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.141

100

0.401
  ssbB/cilA Streptococcus pneumoniae Rx1

39.437

100

0.394
  ssbB/cilA Streptococcus pneumoniae D39

39.437

100

0.394
  ssbB/cilA Streptococcus pneumoniae R6

39.437

100

0.394
  ssbB/cilA Streptococcus mitis SK321

39.437

100

0.394