Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PALA1_RS25820 Genome accession   NZ_CP104254
Coordinates   5438027..5439247 (+) Length   406 a.a.
NCBI ID   WP_023101565.1    Uniprot ID   A0A509JJC1
Organism   Pseudomonas aeruginosa strain PALA1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5433027..5444247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA1_RS25800 (PALA1_05092) nadC 5434592..5435440 (+) 849 WP_021264134.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PALA1_RS25810 pilA 5435642..5436091 (-) 450 WP_021264133.1 pilin Machinery gene
  PALA1_RS25815 (PALA1_05094) pilB 5436323..5438023 (+) 1701 WP_269972702.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PALA1_RS25820 (PALA1_05095) pilC 5438027..5439247 (+) 1221 WP_023101565.1 type 4a pilus biogenesis protein PilC Machinery gene
  PALA1_RS25825 (PALA1_05096) pilD 5439251..5440123 (+) 873 WP_021264129.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  PALA1_RS25830 (PALA1_05097) coaE 5440120..5440731 (+) 612 WP_003094654.1 dephospho-CoA kinase -
  PALA1_RS25835 (PALA1_05098) yacG 5440728..5440928 (+) 201 WP_003094656.1 DNA gyrase inhibitor YacG -
  PALA1_RS25840 (PALA1_05099) - 5440965..5441174 (-) 210 WP_003094660.1 hypothetical protein -
  PALA1_RS25845 (PALA1_05100) - 5441280..5441969 (-) 690 WP_003094662.1 energy-coupling factor ABC transporter permease -
  PALA1_RS25850 (PALA1_05101) - 5441966..5442436 (-) 471 WP_003094664.1 hypothetical protein -
  PALA1_RS25855 (PALA1_05102) - 5442433..5442858 (-) 426 WP_021264128.1 GNAT family N-acetyltransferase -
  PALA1_RS25860 (PALA1_05103) - 5442991..5443620 (+) 630 WP_003094668.1 DUF1780 domain-containing protein -
  PALA1_RS25865 (PALA1_05104) - 5443617..5444066 (+) 450 WP_021264127.1 MOSC domain-containing protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44346.12 Da        Isoelectric Point: 9.8784

>NTDB_id=728130 PALA1_RS25820 WP_023101565.1 5438027..5439247(+) (pilC) [Pseudomonas aeruginosa strain PALA1]
MADKALKTSVFIWEGTDKKGAKVKGELTGQNPMLVKAHLRKQGINPLKVRKKGISLLGAGKKVKPMDIALFTRQMATMMG
AGVPLLQSFDIIGEGFDNPNMRKLVDEIKQEVSSGNSLANSLRKKPQYFDELYCNLVDAGEQSGALENLLDRVATYKEKT
ESLKAKIRKAMTYPIAVIIVALIVSAILLIKVVPQFQSVFQGFGAELPAFTQMVVNLSEFLQEWWLAVIVGVGVIGFTFK
ELHKRSKKFRDTLDRTILKLPIFGGIVYKSAVARYARTLSTTFAAGVPLVDALDSVSGATGNIVFKNAVSKIKQDVSTGM
QLNFSMRTTSVFPNMAIQMTAIGEESGSLDEMLSKVASYYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGLIVAMYLPIFQ
LGNVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=728130 PALA1_RS25820 WP_023101565.1 5438027..5439247(+) (pilC) [Pseudomonas aeruginosa strain PALA1]
ATGGCGGACAAAGCGTTAAAAACCAGCGTTTTCATCTGGGAGGGCACCGACAAGAAAGGCGCCAAGGTCAAGGGCGAACT
GACCGGGCAGAATCCCATGCTGGTGAAGGCCCATCTGCGCAAGCAGGGCATCAATCCGCTCAAGGTACGCAAGAAAGGTA
TCTCCCTGCTGGGCGCAGGCAAGAAAGTCAAACCCATGGACATCGCCCTGTTCACCCGGCAGATGGCGACCATGATGGGT
GCTGGCGTTCCCCTCCTGCAATCGTTCGACATCATCGGCGAAGGCTTCGACAATCCCAACATGCGCAAGCTGGTGGATGA
GATCAAGCAGGAAGTGTCCTCGGGCAACAGCCTGGCCAACTCACTGAGAAAGAAACCGCAGTACTTCGACGAACTCTATT
GCAACCTGGTCGATGCCGGCGAGCAATCGGGCGCCTTGGAAAACTTGCTGGATAGAGTCGCGACCTACAAGGAAAAAACG
GAATCGTTAAAAGCAAAGATCAGGAAGGCGATGACTTATCCTATCGCCGTCATCATCGTTGCCTTAATCGTCTCCGCCAT
TCTTCTGATCAAGGTCGTCCCGCAGTTCCAATCCGTATTCCAAGGTTTTGGCGCAGAGCTGCCTGCCTTCACTCAAATGG
TCGTAAATTTATCCGAGTTCCTACAGGAATGGTGGCTTGCCGTCATCGTTGGCGTGGGGGTGATTGGCTTTACCTTCAAG
GAACTGCATAAACGCTCAAAAAAATTCCGCGACACACTCGACAGAACGATCCTCAAACTTCCCATTTTCGGAGGCATCGT
CTACAAATCTGCGGTCGCTCGTTATGCACGGACCTTGTCCACGACCTTCGCCGCGGGTGTTCCCCTGGTCGATGCGCTCG
ACTCCGTCTCCGGAGCGACCGGCAATATCGTGTTCAAGAACGCGGTCAGCAAGATCAAGCAAGACGTTTCCACCGGCATG
CAGCTCAACTTCTCCATGCGCACCACCAGCGTCTTTCCCAACATGGCGATCCAGATGACCGCCATCGGCGAGGAGTCCGG
TTCGCTCGATGAGATGCTGAGCAAAGTCGCCAGCTACTACGAAGAGGAAGTCGACAACGCCGTGGACAACCTCACCACGC
TCATGGAACCGATGATCATGGCCGTTCTCGGCGTACTGGTTGGCGGTCTGATCGTGGCCATGTACCTTCCGATCTTCCAA
CTCGGCAACGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A509JJC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

77.037

99.754

0.768
  pilC Acinetobacter baumannii D1279779

60.644

99.507

0.603
  pilC Acinetobacter baylyi ADP1

60.345

100

0.603
  pilC Legionella pneumophila strain ERS1305867

54.545

97.537

0.532
  pilG Neisseria meningitidis 44/76-A

45.658

99.261

0.453
  pilG Neisseria gonorrhoeae MS11

45.409

99.261

0.451
  pilC Vibrio cholerae strain A1552

42.365

100

0.424
  pilC Vibrio campbellii strain DS40M4

41.604

98.276

0.409
  pilC Thermus thermophilus HB27

36.908

98.768

0.365