Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PALA1_RS25825 | Genome accession | NZ_CP104254 |
| Coordinates | 5439251..5440123 (+) | Length | 290 a.a. |
| NCBI ID | WP_021264129.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain PALA1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5434251..5445123
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PALA1_RS25800 (PALA1_05092) | nadC | 5434592..5435440 (+) | 849 | WP_021264134.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| PALA1_RS25810 | pilA | 5435642..5436091 (-) | 450 | WP_021264133.1 | pilin | Machinery gene |
| PALA1_RS25815 (PALA1_05094) | pilB | 5436323..5438023 (+) | 1701 | WP_269972702.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PALA1_RS25820 (PALA1_05095) | pilC | 5438027..5439247 (+) | 1221 | WP_023101565.1 | type 4a pilus biogenesis protein PilC | Machinery gene |
| PALA1_RS25825 (PALA1_05096) | pilD | 5439251..5440123 (+) | 873 | WP_021264129.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| PALA1_RS25830 (PALA1_05097) | coaE | 5440120..5440731 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| PALA1_RS25835 (PALA1_05098) | yacG | 5440728..5440928 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| PALA1_RS25840 (PALA1_05099) | - | 5440965..5441174 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| PALA1_RS25845 (PALA1_05100) | - | 5441280..5441969 (-) | 690 | WP_003094662.1 | energy-coupling factor ABC transporter permease | - |
| PALA1_RS25850 (PALA1_05101) | - | 5441966..5442436 (-) | 471 | WP_003094664.1 | hypothetical protein | - |
| PALA1_RS25855 (PALA1_05102) | - | 5442433..5442858 (-) | 426 | WP_021264128.1 | GNAT family N-acetyltransferase | - |
| PALA1_RS25860 (PALA1_05103) | - | 5442991..5443620 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| PALA1_RS25865 (PALA1_05104) | - | 5443617..5444066 (+) | 450 | WP_021264127.1 | MOSC domain-containing protein | - |
| PALA1_RS25870 (PALA1_05105) | - | 5444092..5444262 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31823.84 Da Isoelectric Point: 7.3860
>NTDB_id=728131 PALA1_RS25825 WP_021264129.1 5439251..5440123(+) (pilD) [Pseudomonas aeruginosa strain PALA1]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPSSACPHCGHEIR
PWENIPLVSYLALGGKCSSCKATIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPSSACPHCGHEIR
PWENIPLVSYLALGGKCSSCKATIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=728131 PALA1_RS25825 WP_021264129.1 5439251..5440123(+) (pilD) [Pseudomonas aeruginosa strain PALA1]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCAGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAGTTCGGCGTGCCCGCACTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCACCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCAGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAGTTCGGCGTGCCCGCACTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCACCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
56.071 |
96.552 |
0.541 |
| pilD | Vibrio campbellii strain DS40M4 |
53.004 |
97.586 |
0.517 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
49.281 |
95.862 |
0.472 |