Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NZD86_RS22985 Genome accession   NZ_CP104064
Coordinates   4614025..4614507 (-) Length   160 a.a.
NCBI ID   WP_268044417.1    Uniprot ID   -
Organism   Alicyclobacillus dauci strain DSM 28700     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 4596171..4624083 4614025..4614507 within 0


Gene organization within MGE regions


Location: 4596171..4624083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NZD86_RS22885 (NZD86_22905) - 4596171..4596662 (-) 492 WP_268044385.1 helix-turn-helix domain-containing protein -
  NZD86_RS24575 - 4597199..4597630 (+) 432 Protein_4468 DNA ligase -
  NZD86_RS22895 (NZD86_22915) - 4598078..4598575 (-) 498 WP_268044387.1 GIY-YIG nuclease family protein -
  NZD86_RS22900 (NZD86_22920) - 4599112..4599369 (-) 258 WP_268044389.1 group II intron maturase-specific domain-containing protein -
  NZD86_RS24860 - 4599493..4599711 (-) 219 Protein_4471 reverse transcriptase domain-containing protein -
  NZD86_RS22905 (NZD86_22925) - 4599633..4600295 (-) 663 WP_268044391.1 reverse transcriptase domain-containing protein -
  NZD86_RS22910 (NZD86_22930) - 4600502..4600693 (-) 192 WP_268044393.1 hypothetical protein -
  NZD86_RS22915 (NZD86_22935) - 4600806..4601495 (+) 690 WP_268044395.1 helix-turn-helix transcriptional regulator -
  NZD86_RS22920 (NZD86_22940) - 4601499..4602542 (+) 1044 Protein_4475 recombinase family protein -
  NZD86_RS22925 (NZD86_22945) rlmH 4603152..4603643 (-) 492 WP_326492619.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  NZD86_RS22930 (NZD86_22950) - 4603682..4604953 (-) 1272 WP_268044396.1 S1C family serine protease -
  NZD86_RS22935 (NZD86_22955) - 4605186..4605995 (-) 810 WP_268044398.1 MBL fold metallo-hydrolase -
  NZD86_RS22940 (NZD86_22960) yycI 4606008..4606835 (-) 828 WP_268044400.1 two-component system regulatory protein YycI -
  NZD86_RS22945 (NZD86_22965) yycH 4606832..4608130 (-) 1299 WP_268044402.1 two-component system activity regulator YycH -
  NZD86_RS22950 (NZD86_22970) - 4608127..4609896 (-) 1770 WP_268044404.1 ATP-binding protein -
  NZD86_RS22955 (NZD86_22975) - 4609898..4610590 (-) 693 WP_268044406.1 response regulator -
  NZD86_RS22960 (NZD86_22980) - 4610613..4611071 (-) 459 WP_268044408.1 hypothetical protein -
  NZD86_RS22965 (NZD86_22985) dnaB 4611074..4612453 (-) 1380 WP_268044410.1 replicative DNA helicase -
  NZD86_RS22970 (NZD86_22990) rplI 4612505..4612948 (-) 444 WP_268044412.1 50S ribosomal protein L9 -
  NZD86_RS22975 (NZD86_22995) - 4613228..4613533 (-) 306 WP_268044414.1 MazG-like family protein -
  NZD86_RS22980 (NZD86_23000) rpsR 4613742..4613972 (-) 231 WP_268044416.1 30S ribosomal protein S18 -
  NZD86_RS22985 (NZD86_23005) ssbA 4614025..4614507 (-) 483 WP_268044417.1 single-stranded DNA-binding protein Machinery gene
  NZD86_RS22990 (NZD86_23010) rpsF 4614525..4614812 (-) 288 WP_268044418.1 30S ribosomal protein S6 -
  NZD86_RS22995 (NZD86_23015) ychF 4614959..4616059 (-) 1101 WP_268044419.1 redox-regulated ATPase YchF -
  NZD86_RS23000 (NZD86_23020) - 4616615..4618621 (-) 2007 WP_268044420.1 molybdopterin-dependent oxidoreductase -
  NZD86_RS23005 (NZD86_23025) - 4618593..4618826 (-) 234 WP_268044421.1 DUF951 domain-containing protein -
  NZD86_RS23010 (NZD86_23030) - 4618883..4619749 (-) 867 WP_268044422.1 mechanosensitive ion channel family protein -
  NZD86_RS23015 (NZD86_23035) - 4619771..4620379 (-) 609 WP_268044423.1 hypothetical protein -
  NZD86_RS23020 (NZD86_23040) yyaC 4620476..4621087 (+) 612 WP_268044424.1 spore protease YyaC -
  NZD86_RS23025 (NZD86_23045) - 4621120..4621644 (-) 525 WP_268044425.1 DUF4446 family protein -
  NZD86_RS23030 (NZD86_23050) - 4621740..4622462 (-) 723 WP_326492620.1 DUF554 domain-containing protein -
  NZD86_RS23035 (NZD86_23055) - 4622472..4623323 (-) 852 WP_268044426.1 ParB/RepB/Spo0J family partition protein -
  NZD86_RS23040 (NZD86_23060) - 4623316..4624083 (-) 768 WP_268044427.1 ParA family protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17901.75 Da        Isoelectric Point: 4.6529

>NTDB_id=727425 NZD86_RS22985 WP_268044417.1 4614025..4614507(-) (ssbA) [Alicyclobacillus dauci strain DSM 28700]
MLNRVILIGRLTQDPELRYTNSGTPVASFTLAVDRQMRSGQNGERQTDFINIVVWQKQAEIVSQYLQKGRLAAVDGRLQI
RTYENREGQKVRVAEVVAESVRFLDRGPDQQQQSGFGNAPSTGGQRPRTNNNSGSAPLYEDDPFADDSQTIDISEDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=727425 NZD86_RS22985 WP_268044417.1 4614025..4614507(-) (ssbA) [Alicyclobacillus dauci strain DSM 28700]
ATGCTGAACCGGGTAATTTTAATTGGACGTTTGACCCAAGATCCTGAGTTGCGTTACACGAATTCAGGAACACCTGTTGC
ATCGTTCACACTCGCTGTGGATCGACAGATGCGGTCAGGTCAAAATGGTGAGAGACAAACGGATTTCATCAACATTGTTG
TCTGGCAAAAACAGGCGGAGATCGTATCGCAGTATCTGCAGAAGGGCCGGTTGGCAGCTGTTGACGGGCGTTTGCAAATT
CGCACTTACGAGAACCGTGAGGGTCAGAAAGTTCGTGTGGCGGAAGTTGTTGCAGAATCTGTTCGCTTTTTGGACAGGGG
TCCTGATCAACAACAGCAAAGTGGCTTCGGTAATGCACCGAGCACTGGGGGACAACGCCCACGTACCAATAACAATAGTG
GTTCAGCACCTCTGTACGAAGATGATCCTTTTGCTGATGACAGTCAAACCATCGACATTTCAGAAGATGACTTGCCCTTT
TGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.857

100

0.556
  ssb Latilactobacillus sakei subsp. sakei 23K

45.614

100

0.487
  ssb Neisseria gonorrhoeae MS11

34.973

100

0.4
  ssb Neisseria meningitidis MC58

34.091

100

0.375
  ssbB/cilA Streptococcus mitis SK321

37.5

100

0.375
  ssbB/cilA Streptococcus mitis NCTC 12261

36.875

100

0.369
  ssbB Streptococcus sobrinus strain NIDR 6715-7

36.875

100

0.369
  ssbB/cilA Streptococcus pneumoniae TIGR4

36.875

100

0.369
  ssbB/cilA Streptococcus pneumoniae D39

36.25

100

0.363
  ssbB/cilA Streptococcus pneumoniae Rx1

36.25

100

0.363
  ssbB/cilA Streptococcus pneumoniae R6

36.25

100

0.363