NTDB

Overview

Name	ssbA	Type	Machinery gene
Locus tag	N2A93_RS00935	Genome accession	NZ_CP104046
Coordinates	148899..149297 (+)	Length	132 a.a.
NCBI ID	WP_003105619.1	Uniprot ID	A0A0E2UAZ2
Organism	Streptococcus parauberis strain KSP14
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 143899..154297

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N2A93_RS00895 (N2A93_00895)	-	143973..144185 (+)	213	WP_003108636.1	helix-turn-helix transcriptional regulator	-
N2A93_RS00900 (N2A93_00900)	-	144178..144630 (+)	453	WP_003108634.1	hypothetical protein	-
N2A93_RS00905 (N2A93_00905)	-	144639..145292 (+)	654	WP_003108632.1	CPBP family intramembrane glutamic endopeptidase	-
N2A93_RS00910 (N2A93_00910)	proC	145309..146079 (-)	771	WP_004347169.1	pyrroline-5-carboxylate reductase	-
N2A93_RS00915 (N2A93_00915)	pepA	146091..147158 (-)	1068	WP_003105090.1	glutamyl aminopeptidase	-
N2A93_RS00920 (N2A93_00920)	-	147521..147802 (+)	282	WP_004347168.1	DUF4651 domain-containing protein	-
N2A93_RS00925 (N2A93_00925)	-	147802..148119 (+)	318	WP_003103432.1	thioredoxin family protein	-
N2A93_RS00930 (N2A93_00930)	ytpR	148135..148761 (+)	627	WP_004347165.1	YtpR family tRNA-binding protein	-
N2A93_RS00935 (N2A93_00935)	ssbA	148899..149297 (+)	399	WP_003105619.1	single-stranded DNA-binding protein	Machinery gene
N2A93_RS00940 (N2A93_00940)	-	149766..150737 (+)	972	WP_004347164.1	ABC transporter substrate-binding protein	-
N2A93_RS00945 (N2A93_00945)	-	150749..151735 (+)	987	WP_004347163.1	ABC transporter substrate-binding protein	-
N2A93_RS00950 (N2A93_00950)	-	151770..152654 (+)	885	WP_003104091.1	ABC transporter permease	-
N2A93_RS00955 (N2A93_00955)	-	152663..153466 (+)	804	WP_003104647.1	ABC transporter ATP-binding protein	-
N2A93_RS00960 (N2A93_00960)	-	153549..154190 (-)	642	WP_003102694.1	deoxynucleoside kinase	-

Sequence

Protein

Download Length: 132 a.a. Molecular weight: 15171.37 Da Isoelectric Point: 7.7086

                                >NTDB_id=727231 N2A93_RS00935 WP_003105619.1 148899..149297(+) (ssbA) [Streptococcus parauberis strain KSP14]

MYNRVIMIGRLVADPQLIKTPKDKSVCRVSVAVNRRYKNAQGERQVDFVNLVLWGKLAESLVSYGSKGSLISLEGELRTR

RYEKDGKNCYVTEVLCHTFQLLESRAQRAMRENNMTNDLSDLVLDEEDDLPF

Nucleotide

Download Length: 399 bp

                                >NTDB_id=727231 N2A93_RS00935 WP_003105619.1 148899..149297(+) (ssbA) [Streptococcus parauberis strain KSP14]

ATGTACAATAGAGTAATCATGATAGGACGCTTAGTTGCCGACCCACAATTAATTAAGACACCGAAAGATAAGTCGGTTTG

TCGTGTTTCAGTTGCTGTTAATCGTCGTTATAAAAATGCTCAAGGTGAAAGGCAAGTGGACTTTGTCAATTTAGTCTTAT

GGGGGAAACTTGCTGAATCACTAGTTTCCTATGGTAGTAAAGGCAGCCTAATTTCTTTGGAAGGCGAGTTGCGAACACGT

CGCTATGAAAAAGATGGGAAGAACTGTTATGTGACCGAGGTTTTGTGTCATACTTTTCAATTATTAGAAAGTCGTGCGCA

GCGAGCAATGCGTGAAAATAACATGACGAATGATCTCTCTGACTTAGTTCTTGATGAGGAAGATGACCTACCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A0E2UAZ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbA	Streptococcus mutans UA159	74.242	100	0.742
ssbB/cilA	Streptococcus mitis NCTC 12261	71.212	100	0.712
ssbB/cilA	Streptococcus pneumoniae D39	69.697	100	0.697
ssbB/cilA	Streptococcus pneumoniae R6	69.697	100	0.697
ssbB/cilA	Streptococcus pneumoniae Rx1	69.697	100	0.697
ssbB/cilA	Streptococcus pneumoniae TIGR4	68.939	100	0.689
ssbB	Streptococcus sobrinus strain NIDR 6715-7	68.182	100	0.682
ssbB/cilA	Streptococcus mitis SK321	68.182	100	0.682
ssbB	Lactococcus lactis subsp. cremoris KW2	54.464	84.848	0.462
ssb	Latilactobacillus sakei subsp. sakei 23K	45.133	85.606	0.386
ssbB	Bacillus subtilis subsp. subtilis str. 168	45.283	80.303	0.364

Detailed information NTG0727231