Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   N0B28_RS24575 Genome accession   NZ_CP104044
Coordinates   5376710..5377957 (-) Length   415 a.a.
NCBI ID   WP_235593729.1    Uniprot ID   -
Organism   Pseudomonas sp. SD17-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5371710..5382957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0B28_RS24560 (N0B28_24575) - 5373377..5374972 (-) 1596 WP_043859937.1 AAA family ATPase -
  N0B28_RS24565 (N0B28_24580) aroB 5374989..5376086 (-) 1098 WP_043859938.1 3-dehydroquinate synthase -
  N0B28_RS24570 (N0B28_24585) aroK 5376187..5376705 (-) 519 WP_043859939.1 shikimate kinase AroK -
  N0B28_RS24575 (N0B28_24590) pilQ 5376710..5377957 (-) 1248 WP_235593729.1 type IV pilus secretin PilQ Machinery gene
  N0B28_RS24580 (N0B28_24595) - 5378006..5378911 (-) 906 WP_275729366.1 pilus assembly protein PilP -
  N0B28_RS24585 (N0B28_24600) - 5378908..5379438 (-) 531 WP_158255600.1 PilN domain-containing protein -
  N0B28_RS24590 (N0B28_24605) pilM 5379435..5380286 (-) 852 WP_275729369.1 pilus assembly protein PilM -
  N0B28_RS24595 (N0B28_24610) - 5380461..5382893 (+) 2433 WP_173925097.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 44206.59 Da        Isoelectric Point: 4.8950

>NTDB_id=727193 N0B28_RS24575 WP_235593729.1 5376710..5377957(-) (pilQ) [Pseudomonas sp. SD17-1]
MVALPVAGAGLGAEGAGYGGEPLSLSFQDVEVRSVLKVLADFTGVNLVASDAVQGKVTLRLHEVPWEQALDLVLRSKGLG
RRQEGNVLLVAPLAELAGHDTQARAAQAPPTLVRELLTVSHARAGDIVQLFQAMVEDDDPGAITVDERTNTIIASQPSAR
LADLRRLLAQLDVPVRQVMIEARIVEANVDYEKSLGVRWGGAVQLGGGLRAGGLAADGLPFVDLGVERATSGIGLGLVRD
SVLLDLELSAMEKTGNGEIISQPKVVTADKETARILKGTEVPYQESGANGTTSTTFREASLSLEVTPQITADNRVIMTVK
VTKDEPDYLNALNSVPPIRKNEVNAKVQVGDGETIVIGGVYATVQSNVVDKVPFFGDVPYVGRLFRRAVIQEKKSELLVF
LTPRIMSDRAIAVSR

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=727193 N0B28_RS24575 WP_235593729.1 5376710..5377957(-) (pilQ) [Pseudomonas sp. SD17-1]
ATGGTGGCGCTGCCGGTAGCAGGTGCAGGCCTTGGGGCCGAGGGGGCAGGGTATGGCGGCGAGCCGCTGTCGTTGAGTTT
CCAGGATGTCGAGGTGCGTTCGGTGCTCAAGGTGCTGGCCGACTTCACCGGGGTCAACCTGGTGGCCAGTGATGCAGTGC
AGGGCAAGGTGACCCTGCGCCTGCACGAGGTGCCCTGGGAACAGGCACTGGACCTGGTGCTGCGCAGCAAGGGCCTGGGT
CGGCGTCAGGAGGGCAACGTGCTGCTGGTGGCGCCTTTGGCCGAACTGGCCGGGCACGATACCCAGGCCCGTGCGGCGCA
GGCCCCGCCAACGCTGGTGCGCGAACTGCTCACGGTCAGCCATGCGCGGGCCGGGGACATCGTGCAGCTGTTCCAGGCCA
TGGTCGAGGACGACGACCCCGGCGCGATCACGGTCGACGAGCGCACCAACACCATCATTGCCAGCCAGCCGTCGGCACGC
CTGGCCGACCTGCGGCGGCTGCTCGCGCAGCTTGATGTACCGGTTCGCCAGGTGATGATCGAGGCGCGCATCGTCGAGGC
CAATGTCGATTACGAAAAAAGCCTGGGGGTGCGCTGGGGCGGGGCGGTGCAACTGGGCGGCGGCCTGCGCGCAGGCGGGT
TGGCCGCCGACGGGCTGCCGTTCGTCGACCTGGGGGTGGAACGGGCCACCTCGGGTATCGGCCTGGGGTTGGTGCGCGAC
AGTGTGCTGCTCGACCTGGAGCTCAGCGCGATGGAAAAGACCGGCAATGGCGAAATCATCTCCCAGCCCAAGGTGGTCAC
CGCCGACAAGGAAACCGCGCGCATTCTCAAGGGTACCGAGGTGCCGTATCAGGAGTCGGGCGCCAACGGCACTACGTCCA
CCACCTTTCGCGAGGCCTCGCTGTCGCTGGAGGTGACCCCGCAGATCACGGCCGACAACCGGGTGATCATGACGGTCAAG
GTCACCAAGGACGAGCCGGACTACCTCAATGCCCTCAACAGCGTGCCGCCGATCCGCAAGAACGAGGTGAATGCCAAGGT
TCAGGTGGGGGATGGCGAGACCATCGTGATCGGCGGGGTGTATGCCACCGTGCAAAGTAATGTTGTCGACAAGGTGCCAT
TTTTCGGCGATGTGCCGTATGTTGGGCGGCTGTTTCGTCGCGCTGTCATCCAAGAGAAAAAATCCGAGCTGCTGGTCTTC
CTGACTCCGCGTATCATGAGTGACCGGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(117-177)

Bacterial type II and III secretion system protein (Secretin)

(250-406)

Secretin and TonB N terminus short domain (STN)

(46-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

60.046

100

0.634
  pilQ Acinetobacter baumannii D1279779

40.998

100

0.455
  pilQ Acinetobacter baumannii strain A118

40.998

100

0.455
  comQ Acinetobacter baylyi ADP1

41.387

100

0.446
  pilQ Legionella pneumophila strain ERS1305867

40.385

100

0.405
  pilQ Legionella pneumophila strain Lp02

40.385

100

0.405
  pilQ Vibrio campbellii strain DS40M4

39.059

100

0.4
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

39.713

100

0.4
  pilQ Vibrio cholerae strain A1552

39.713

100

0.4
  pilQ Neisseria meningitidis MC58

35.885

100

0.361
  pilQ Neisseria meningitidis M1080

35.885

100

0.361