Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NYR34_RS01030 Genome accession   NZ_CP103951
Coordinates   192329..192775 (+) Length   148 a.a.
NCBI ID   WP_012242151.1    Uniprot ID   A0A553IJK0
Organism   Acholeplasma laidlawii strain JS42     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 187329..197775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR34_RS01000 tuf 187543..188730 (+) 1188 WP_012242145.1 elongation factor Tu -
  NYR34_RS01005 - 188882..189640 (+) 759 WP_264229921.1 TatD family hydrolase -
  NYR34_RS01010 - 189637..190392 (+) 756 WP_264229922.1 serine protease -
  NYR34_RS01015 - 190397..191485 (+) 1089 WP_264229923.1 trypsin-like peptidase domain-containing protein -
  NYR34_RS01020 - 191482..191931 (+) 450 WP_264229924.1 CinA family protein -
  NYR34_RS01025 rpsF 192039..192326 (+) 288 WP_012242150.1 30S ribosomal protein S6 -
  NYR34_RS01030 ssbA 192329..192775 (+) 447 WP_012242151.1 single-stranded DNA-binding protein Machinery gene
  NYR34_RS01035 rpsR 192791..193033 (+) 243 WP_012242152.1 30S ribosomal protein S18 -
  NYR34_RS01040 rplI 193179..195635 (+) 2457 WP_264229925.1 50S ribosomal protein L9 -
  NYR34_RS01045 dnaB 195638..196972 (+) 1335 WP_264229926.1 replicative DNA helicase -
  NYR34_RS01050 - 197033..197467 (-) 435 WP_264229927.1 DNA starvation/stationary phase protection protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16630.25 Da        Isoelectric Point: 4.6419

>NTDB_id=726581 NYR34_RS01030 WP_012242151.1 192329..192775(+) (ssbA) [Acholeplasma laidlawii strain JS42]
MINRVVLVGRITKDVDHRVTTSGASVVSFTLAVNRNFTSASGEREADFINCVTWRASADFMKNYVKKGNLLAVDGRMQTR
NYEDNDGRTVYITEVVADSVQLLESRSSNQSDNSGQYRNKYEANQSNDAQDELYESTKNLIADDDLPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=726581 NYR34_RS01030 WP_012242151.1 192329..192775(+) (ssbA) [Acholeplasma laidlawii strain JS42]
ATGATTAATCGTGTCGTATTAGTTGGCCGTATAACAAAAGATGTAGACCATAGAGTGACCACCTCAGGTGCAAGCGTTGT
GAGTTTTACATTAGCTGTGAATCGTAATTTCACTTCTGCAAGTGGTGAAAGAGAAGCAGACTTCATTAACTGTGTTACAT
GGAGAGCATCTGCAGATTTCATGAAAAATTATGTTAAAAAGGGTAACTTACTAGCTGTTGATGGTCGCATGCAAACAAGA
AATTATGAAGATAATGATGGCCGCACAGTATACATTACAGAAGTTGTAGCAGACAGCGTACAACTATTAGAGTCTAGAAG
TTCTAATCAATCTGATAACTCTGGACAATATAGAAATAAATATGAGGCAAATCAATCAAATGATGCTCAAGATGAATTGT
ATGAAAGTACAAAAAACTTGATTGCTGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A553IJK0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.837

100

0.568
  ssb Latilactobacillus sakei subsp. sakei 23K

48.824

100

0.561
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.216

100

0.412
  ssbA Streptococcus mutans UA159

39.865

100

0.399
  ssbB/cilA Streptococcus pneumoniae TIGR4

38.514

100

0.385
  ssbB/cilA Streptococcus mitis NCTC 12261

37.838

100

0.378
  ssbB/cilA Streptococcus pneumoniae Rx1

37.838

100

0.378
  ssbB/cilA Streptococcus pneumoniae D39

37.838

100

0.378
  ssbB/cilA Streptococcus pneumoniae R6

37.838

100

0.378
  ssbB/cilA Streptococcus mitis SK321

37.838

100

0.378
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.45

75

0.378