Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | myaer102_RS32645 | Genome accession | NZ_AP019314 |
| Coordinates | 4170898..4171341 (+) | Length | 147 a.a. |
| NCBI ID | WP_232023877.1 | Uniprot ID | - |
| Organism | Microcystis viridis NIES-102 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4165898..4176341
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| myaer102_RS21385 (myaer102_39040) | pilB/pilB1 | 4166700..4168715 (+) | 2016 | WP_125731554.1 | GspE/PulE family protein | Machinery gene |
| myaer102_RS21390 (myaer102_39050) | pilT | 4168861..4169961 (+) | 1101 | WP_002797770.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| myaer102_RS32640 | - | 4170353..4170642 (+) | 290 | Protein_4037 | type II secretion system F family protein | - |
| myaer102_RS32645 | pilC | 4170898..4171341 (+) | 444 | WP_232023877.1 | type II secretion system F family protein | Machinery gene |
| myaer102_RS21400 | - | 4171437..4171646 (+) | 210 | WP_012264077.1 | hypothetical protein | - |
| myaer102_RS21405 (myaer102_39080) | - | 4171725..4172192 (+) | 468 | Protein_4040 | hypothetical protein | - |
| myaer102_RS21410 (myaer102_39090) | - | 4172235..4174805 (-) | 2571 | WP_002797773.1 | TIGR03960 family B12-binding radical SAM protein | - |
| myaer102_RS21415 | - | 4174985..4176134 (+) | 1150 | Protein_4042 | IS630 family transposase | - |
Sequence
Protein
Download Length: 147 a.a. Molecular weight: 15719.67 Da Isoelectric Point: 4.2220
>NTDB_id=72416 myaer102_RS32645 WP_232023877.1 4170898..4171341(+) (pilC) [Microcystis viridis NIES-102]
MPLFGDLNEKSAVARFCRVFGTLTRSGVPILSSLDIVCNTVGNQVIANAIAGAKAEIQQGGMMSLALQKANVFPPLAIQM
ISIGEETGELDAMMMKVADFYEDEVEQAVKALTSIIEPLMMIGVAGMVGIILLSMYLPMFKIFDALG
MPLFGDLNEKSAVARFCRVFGTLTRSGVPILSSLDIVCNTVGNQVIANAIAGAKAEIQQGGMMSLALQKANVFPPLAIQM
ISIGEETGELDAMMMKVADFYEDEVEQAVKALTSIIEPLMMIGVAGMVGIILLSMYLPMFKIFDALG
Nucleotide
Download Length: 444 bp
>NTDB_id=72416 myaer102_RS32645 WP_232023877.1 4170898..4171341(+) (pilC) [Microcystis viridis NIES-102]
ATGCCTCTTTTTGGTGATTTGAATGAAAAGTCAGCTGTGGCTAGATTTTGCCGGGTTTTTGGGACTCTGACGCGTTCTGG
TGTCCCGATTTTAAGTTCTCTCGACATCGTTTGTAATACGGTGGGTAATCAGGTAATTGCCAATGCGATCGCCGGTGCCA
AGGCGGAAATTCAGCAGGGGGGAATGATGAGTTTGGCCCTACAAAAAGCCAATGTTTTCCCACCTTTGGCAATTCAAATG
ATTAGTATTGGGGAGGAAACGGGAGAATTAGATGCCATGATGATGAAAGTGGCGGATTTCTACGAAGATGAGGTGGAACA
GGCCGTTAAAGCTTTAACCAGTATCATTGAACCCTTGATGATGATTGGTGTTGCGGGGATGGTGGGAATTATTCTTTTGT
CTATGTACTTGCCCATGTTTAAAATCTTCGATGCGTTGGGATAA
ATGCCTCTTTTTGGTGATTTGAATGAAAAGTCAGCTGTGGCTAGATTTTGCCGGGTTTTTGGGACTCTGACGCGTTCTGG
TGTCCCGATTTTAAGTTCTCTCGACATCGTTTGTAATACGGTGGGTAATCAGGTAATTGCCAATGCGATCGCCGGTGCCA
AGGCGGAAATTCAGCAGGGGGGAATGATGAGTTTGGCCCTACAAAAAGCCAATGTTTTCCCACCTTTGGCAATTCAAATG
ATTAGTATTGGGGAGGAAACGGGAGAATTAGATGCCATGATGATGAAAGTGGCGGATTTCTACGAAGATGAGGTGGAACA
GGCCGTTAAAGCTTTAACCAGTATCATTGAACCCTTGATGATGATTGGTGTTGCGGGGATGGTGGGAATTATTCTTTTGT
CTATGTACTTGCCCATGTTTAAAATCTTCGATGCGTTGGGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Thermus thermophilus HB27 |
51.701 |
100 |
0.517 |
| pilC | Legionella pneumophila strain ERS1305867 |
40.411 |
99.32 |
0.401 |
| pilC | Pseudomonas stutzeri DSM 10701 |
40.845 |
96.599 |
0.395 |
| pilC | Acinetobacter baylyi ADP1 |
39.437 |
96.599 |
0.381 |
| pilC | Acinetobacter baumannii D1279779 |
39.437 |
96.599 |
0.381 |
| pilC | Vibrio campbellii strain DS40M4 |
38.095 |
100 |
0.381 |
| pilC | Vibrio cholerae strain A1552 |
37.671 |
99.32 |
0.374 |
| pilG | Neisseria meningitidis 44/76-A |
38.732 |
96.599 |
0.374 |
| pilG | Neisseria gonorrhoeae MS11 |
38.732 |
96.599 |
0.374 |