Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OPY27_RS24610 Genome accession   NZ_CP118565
Coordinates   5240048..5240512 (-) Length   154 a.a.
NCBI ID   WP_016264268.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA_HN004     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5235048..5245512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPY27_RS24595 (OPY27_24585) nadC 5237559..5238407 (+) 849 WP_003161760.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OPY27_RS24605 (OPY27_24595) - 5238587..5239966 (-) 1380 WP_223290722.1 O-antigen ligase family protein -
  OPY27_RS24610 (OPY27_24600) pilA 5240048..5240512 (-) 465 WP_016264268.1 pilin Machinery gene
  OPY27_RS24615 (OPY27_24605) pilB 5240743..5242443 (+) 1701 WP_241474364.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OPY27_RS24620 (OPY27_24610) pilC 5242447..5243664 (+) 1218 WP_003161763.1 type II secretion system F family protein Machinery gene
  OPY27_RS24625 (OPY27_24615) pilD 5243665..5244537 (+) 873 WP_023084740.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  OPY27_RS24630 (OPY27_24620) coaE 5244534..5245145 (+) 612 WP_003112838.1 dephospho-CoA kinase -
  OPY27_RS24635 (OPY27_24625) yacG 5245142..5245342 (+) 201 WP_003094656.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16089.44 Da        Isoelectric Point: 9.0145

>NTDB_id=722848 OPY27_RS24610 WP_016264268.1 5240048..5240512(-) (pilA) [Pseudomonas aeruginosa strain PA_HN004]
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEVSALKTAAESAILEGKEIVSSKNPTKDQYDIGFTG
STLLKGSEKGQITVKNGTLPTVQLEATLDGSSGAAIKGAVITVSRTADGVWGCSISSTPANWKPNYAPSNCPKS

Nucleotide


Download         Length: 465 bp        

>NTDB_id=722848 OPY27_RS24610 WP_016264268.1 5240048..5240512(-) (pilA) [Pseudomonas aeruginosa strain PA_HN004]
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTCGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATACCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCTGTGAGTGAAGTCAGCGCGCTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGGAAAGAAATTGTTTCCAGTAAGAATCCTACCAAGGACCAATATGATATTGGATTTACCGGT
TCTACCTTGCTGAAAGGGTCGGAGAAAGGTCAGATTACTGTGAAAAATGGTACTCTGCCTACTGTGCAGTTGGAAGCTAC
TCTGGATGGTTCTTCCGGTGCCGCTATTAAAGGTGCAGTTATTACCGTTTCGCGTACCGCTGATGGGGTGTGGGGTTGCT
CGATCAGTAGCACTCCTGCTAACTGGAAACCAAACTATGCCCCCTCTAACTGCCCGAAATCCTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Pseudomonas aeruginosa PAK

42.857

100

0.448
  pilA/pilAI Pseudomonas stutzeri DSM 10701

47.26

94.805

0.448
  pilA Acinetobacter baumannii strain A118

45.205

94.805

0.429
  comP Acinetobacter baylyi ADP1

39.264

100

0.416
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

31.818

100

0.409
  pilA Vibrio cholerae C6706

36.943

100

0.377
  pilA Vibrio cholerae strain A1552

36.943

100

0.377
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

36.943

100

0.377
  pilA/pilAII Pseudomonas stutzeri DSM 10701

38.926

96.753

0.377
  pilA Vibrio parahaemolyticus RIMD 2210633

41.007

90.26

0.37