Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NVV93_RS03725 Genome accession   NZ_CP102830
Coordinates   839110..840327 (-) Length   405 a.a.
NCBI ID   WP_258253111.1    Uniprot ID   -
Organism   Pseudomonas sp. LS44     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 834110..845327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NVV93_RS03690 (NVV93_03690) - 834266..835567 (-) 1302 WP_258253105.1 NAD(P)/FAD-dependent oxidoreductase -
  NVV93_RS03695 (NVV93_03695) - 835628..835801 (-) 174 WP_258253106.1 DUF3094 domain-containing protein -
  NVV93_RS03700 (NVV93_03700) - 835887..836513 (-) 627 WP_258253107.1 DUF1780 domain-containing protein -
  NVV93_RS03705 (NVV93_03705) - 836731..837421 (+) 691 Protein_735 energy-coupling factor ABC transporter permease -
  NVV93_RS03710 (NVV93_03710) yacG 837430..837630 (-) 201 WP_258253108.1 DNA gyrase inhibitor YacG -
  NVV93_RS03715 (NVV93_03715) coaE 837627..838238 (-) 612 WP_258253109.1 dephospho-CoA kinase -
  NVV93_RS03720 (NVV93_03720) pilD 838235..839107 (-) 873 WP_258253110.1 A24 family peptidase Machinery gene
  NVV93_RS03725 (NVV93_03725) pilC 839110..840327 (-) 1218 WP_258253111.1 type II secretion system F family protein Machinery gene
  NVV93_RS03730 (NVV93_03730) pilB 840546..842249 (-) 1704 WP_258253112.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NVV93_RS03740 (NVV93_03740) - 842470..842889 (+) 420 WP_309137384.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  NVV93_RS03745 (NVV93_03745) - 843032..844714 (+) 1683 WP_258253113.1 PglL family O-oligosaccharyltransferase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44270.02 Da        Isoelectric Point: 9.8560

>NTDB_id=719141 NVV93_RS03725 WP_258253111.1 839110..840327(-) (pilC) [Pseudomonas sp. LS44]
MAEKALKTSIFAWEGTDKKGTRMKGELSGQNPALVKAQLRKQGINPIKVRKKGISLFSAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDEVKQEVAAGNSFAASLRKKPQYFDDLYCNLVDSGEQSGALETLLDRVATYKEKT
EALKAKIKKAMNYPIAVVVVAVIVSAILLIKVVPQFQTVFANFGAELPAFTLFVIGISEALQKWWFVFLIGIFAAAVAFK
EAQKRSEKFRDWIDRTVLKLPIVGDILYKSAVARFARTLSTTFAAGVPLVDALDSVAGATGNVVFRNATNKVKSDVSTGM
QLNFSMRTTNTFPTMAIQMTAIGEESGSLDEMLDKVASFYEEEVDNMVDGLTSLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGAVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=719141 NVV93_RS03725 WP_258253111.1 839110..840327(-) (pilC) [Pseudomonas sp. LS44]
ATGGCTGAAAAGGCGTTGAAAACCAGTATTTTTGCCTGGGAAGGGACGGACAAGAAAGGCACCCGCATGAAGGGTGAGCT
CAGCGGGCAGAACCCCGCGCTGGTCAAGGCACAATTGCGCAAACAGGGCATCAACCCGATCAAGGTGCGCAAGAAAGGCA
TCTCGCTATTCAGCGCCGGCAAGAAGATCAAACCCATGGACATAGCCCTGTTCACCCGGCAGATGGCAACCATGATGAAA
GCCGGGGTACCGCTGCTGCAGAGCTTCGACATCATCGGCGAAGGCTTCGATAACCCGAACATGCGCAAGCTGGTGGACGA
GGTCAAACAGGAAGTGGCTGCCGGTAACAGTTTCGCCGCCTCCCTGCGCAAGAAACCGCAGTATTTCGATGATCTGTATT
GCAATTTAGTGGACTCCGGCGAGCAATCCGGAGCACTGGAAACCCTGCTGGATCGCGTCGCTACCTACAAGGAAAAGACC
GAAGCTCTGAAGGCCAAGATTAAGAAGGCGATGAACTACCCGATCGCAGTGGTAGTCGTGGCGGTCATCGTTTCGGCGAT
TTTGCTGATCAAAGTAGTCCCACAGTTCCAGACAGTATTTGCCAACTTCGGCGCCGAACTACCGGCTTTCACTCTATTCG
TAATCGGTATTTCCGAGGCATTGCAAAAGTGGTGGTTTGTTTTTTTGATTGGCATATTTGCTGCGGCAGTTGCCTTTAAG
GAAGCACAGAAGCGCTCGGAAAAATTCCGCGATTGGATAGATCGAACCGTACTCAAACTGCCCATCGTCGGCGATATCCT
CTACAAGTCCGCGGTCGCGCGTTTCGCCCGCACGCTGTCGACCACCTTCGCCGCCGGCGTGCCGCTGGTCGACGCGCTCG
ACTCAGTAGCCGGCGCCACCGGCAACGTGGTGTTCCGCAACGCCACCAATAAGGTCAAGTCAGACGTTTCCACCGGCATG
CAGCTCAACTTCTCCATGCGCACCACTAACACCTTCCCGACCATGGCCATTCAGATGACCGCCATCGGCGAAGAATCCGG
CTCTTTGGACGAAATGCTGGACAAGGTTGCTAGTTTCTATGAGGAAGAAGTCGACAACATGGTCGATGGGCTCACCAGCC
TGATGGAGCCGATGATTATGGCCGTACTCGGCGTGTTGGTCGGCGGCCTGATCATCGCCATGTACCTGCCAATCTTCCAG
CTGGGTGCCGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

86.42

100

0.864
  pilC Acinetobacter baylyi ADP1

61.823

100

0.62
  pilC Acinetobacter baumannii D1279779

60.988

100

0.61
  pilC Legionella pneumophila strain ERS1305867

53.788

97.778

0.526
  pilG Neisseria gonorrhoeae MS11

43.781

99.259

0.435
  pilG Neisseria meningitidis 44/76-A

43.781

99.259

0.435
  pilC Vibrio cholerae strain A1552

41.235

100

0.412
  pilC Vibrio campbellii strain DS40M4

40.152

97.778

0.393
  pilC Thermus thermophilus HB27

36.409

99.012

0.36