Detailed information NTG0719140

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NVV93_RS03720
• Genome accession: NZ_CP102830
• Coordinates: 838235..839107 (-)
• Length: 290 a.a.
• NCBI ID: WP_258253110.1
• Uniprot ID: -
• Organism: Pseudomonas sp. LS44
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 833235..844107

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NVV93_RS03690 (NVV93_03690)	-	834266..835567 (-)	1302	WP_258253105.1	NAD(P)/FAD-dependent oxidoreductase	-
NVV93_RS03695 (NVV93_03695)	-	835628..835801 (-)	174	WP_258253106.1	DUF3094 domain-containing protein	-
NVV93_RS03700 (NVV93_03700)	-	835887..836513 (-)	627	WP_258253107.1	DUF1780 domain-containing protein	-
NVV93_RS03705 (NVV93_03705)	-	836731..837421 (+)	691	Protein_735	energy-coupling factor ABC transporter permease	-
NVV93_RS03710 (NVV93_03710)	yacG	837430..837630 (-)	201	WP_258253108.1	DNA gyrase inhibitor YacG	-
NVV93_RS03715 (NVV93_03715)	coaE	837627..838238 (-)	612	WP_258253109.1	dephospho-CoA kinase	-
NVV93_RS03720 (NVV93_03720)	pilD	838235..839107 (-)	873	WP_258253110.1	A24 family peptidase	Machinery gene
NVV93_RS03725 (NVV93_03725)	pilC	839110..840327 (-)	1218	WP_258253111.1	type II secretion system F family protein	Machinery gene
NVV93_RS03730 (NVV93_03730)	pilB	840546..842249 (-)	1704	WP_258253112.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NVV93_RS03740 (NVV93_03740)	-	842470..842889 (+)	420	WP_309137384.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31747.89 Da
• Isoelectric Point: 6.8883

>NTDB_id=719140 NVV93_RS03720 WP_258253110.1 838235..839107(-) (pilD) [Pseudomonas sp. LS44]
MPVIDFLASHVLAFVLCALLLGLLVGSFLNVVIHRLPKMMLSDWKAQAREVLELPAEASGHTFNLILPNSHCPACGHEIK
AWENIPLLSYLALRGKCSACKAPISLRYPLVELACGLLSAYVAWHFGFNWQGGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIINQFGLFASLEDALWGAIAGYLSLWSVYWLFKLITGKEGMGHGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVIMLRLRNAETSTPIPFGPYLAIAGWIALLWGDQITATYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=719140 NVV93_RS03720 WP_258253110.1 838235..839107(-) (pilD) [Pseudomonas sp. LS44]
ATGCCTGTTATCGACTTTCTGGCCAGTCATGTGCTGGCCTTTGTTTTGTGCGCACTGCTGCTTGGCCTGCTGGTCGGCAG
TTTTCTCAATGTGGTAATCCATCGCCTGCCGAAGATGATGCTCAGCGACTGGAAGGCTCAGGCACGGGAAGTGCTGGAGC
TGCCGGCAGAAGCCAGCGGCCATACTTTCAACTTGATCCTACCCAACTCCCACTGCCCAGCCTGTGGCCACGAGATCAAG
GCGTGGGAAAACATCCCGCTGCTCAGTTATCTGGCCCTACGCGGCAAGTGTTCGGCCTGCAAAGCGCCGATCAGCCTGCG
CTACCCGCTGGTGGAGCTGGCTTGCGGCTTGCTTTCGGCCTATGTCGCCTGGCACTTCGGCTTCAATTGGCAGGGCGGCG
CCATGCTGCTGCTTACTTGGGGGCTGCTGGCGATGAGCTTGATTGATGCCGACCACCAATTGCTGCCTGACGTATTGGTA
CTGCCATTGCTATGGCTAGGCCTAATCATTAATCAGTTCGGCCTGTTCGCCAGCCTCGAAGATGCCTTGTGGGGCGCGAT
TGCCGGTTATCTCAGCCTCTGGTCGGTGTATTGGCTGTTCAAGCTCATCACCGGCAAGGAAGGCATGGGCCATGGCGACT
TCAAGCTGCTCGCCATGCTTGGCGCGTGGGGCGGCTGGCAGATATTGCCGCTGACTATCCTGCTCTCCTCGCTGGTCGGC
GCAGTATTGGGCGTAATCATGCTGCGCCTGCGCAATGCCGAAACCAGCACGCCTATCCCCTTCGGCCCCTACCTGGCAAT
TGCGGGCTGGATCGCACTGCTCTGGGGTGATCAAATAACCGCAACCTATCTGCAATTTGCCGGTTTTAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.678	94.138	0.524
pilD	Vibrio campbellii strain DS40M4	53.48	94.138	0.503
pilD	Acinetobacter baumannii D1279779	51.237	97.586	0.5
pilD	Acinetobacter nosocomialis M2	51.237	97.586	0.5
pilD	Neisseria gonorrhoeae MS11	50.19	90.69	0.455