Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NUG21_RS05715 Genome accession   NZ_CP102594
Coordinates   1330931..1332190 (-) Length   419 a.a.
NCBI ID   WP_263393035.1    Uniprot ID   -
Organism   Xanthomonas sp. CFBP 8445     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1325931..1337190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUG21_RS05695 (NUG21_05695) - 1327304..1327981 (+) 678 WP_010340533.1 response regulator transcription factor -
  NUG21_RS05700 (NUG21_05700) - 1327974..1329308 (+) 1335 WP_160947577.1 HAMP domain-containing sensor histidine kinase -
  NUG21_RS05705 (NUG21_05705) coaE 1329418..1330047 (-) 630 WP_019797203.1 dephospho-CoA kinase -
  NUG21_RS05710 (NUG21_05710) - 1330061..1330924 (-) 864 WP_010342233.1 A24 family peptidase -
  NUG21_RS05715 (NUG21_05715) pilC 1330931..1332190 (-) 1260 WP_263393035.1 type II secretion system F family protein Machinery gene
  NUG21_RS05720 (NUG21_05720) pilA/pilAI 1332555..1332974 (+) 420 WP_019799634.1 pilin Machinery gene
  NUG21_RS05725 (NUG21_05725) - 1333008..1333481 (+) 474 WP_160947579.1 pilin -
  NUG21_RS05730 (NUG21_05730) pilB 1333522..1335255 (+) 1734 WP_160947580.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NUG21_RS05735 (NUG21_05735) pilR 1335417..1336805 (-) 1389 WP_242080579.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45863.37 Da        Isoelectric Point: 10.1706

>NTDB_id=717985 NUG21_RS05715 WP_263393035.1 1330931..1332190(-) (pilC) [Xanthomonas sp. CFBP 8445]
MSATRSAVKKEPVARNTSQQLPFVWEGTDKRGIKMKGEQIAKNANLLRAELRRQGITPSVVKPKPKPLFGAAGKKITPKD
IAFFSRQMATMMKSGVPIVGSLEIIASGHKNPRMKKMVDQIRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENIEALKGKIKKALFYPAMVMAVALIVTSILLVWVVPQFEDVFKGFGAELPAFTQMIVAASRFMVAYWWM
LLLLLIGTIGGFIFAYKRSPAMQHGMDRLVLKVPIIGQIMHNSSVARFSRTLAVTFRAGVPLVEALDIVAGATGNSVYET
AVLRMRDDVSVGYPVNMAMKQTNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFELEVNNAVDALSSLIEPLIMVFIGTIV
GGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=717985 NUG21_RS05715 WP_263393035.1 1330931..1332190(-) (pilC) [Xanthomonas sp. CFBP 8445]
ATGTCCGCAACTCGCAGCGCAGTCAAGAAAGAGCCGGTCGCGCGCAATACCAGCCAACAGCTGCCCTTCGTCTGGGAGGG
CACCGACAAGCGCGGCATCAAGATGAAGGGCGAGCAGATCGCCAAGAACGCCAATCTGTTGCGCGCAGAACTGCGCCGCC
AGGGCATCACCCCGTCGGTGGTCAAACCCAAACCCAAGCCGCTGTTCGGCGCGGCGGGCAAAAAGATCACCCCGAAGGAC
ATCGCCTTCTTCAGTCGCCAAATGGCGACGATGATGAAGTCAGGCGTCCCGATCGTGGGTTCGCTGGAAATCATCGCCAG
CGGGCACAAGAACCCGCGAATGAAGAAGATGGTCGACCAGATCCGCACCGATATCGAAGGCGGTTCATCCCTGTATGAAG
CGATCAGCAAACATCCGGTGCAGTTCGATGAGTTGTATCGCAACTTGGTCAAGGCCGGCGAAGGCGCCGGCGTGCTCGAG
ACCGTGCTGGAGACGGTTGCCACCTACAAAGAGAACATCGAGGCACTGAAAGGCAAGATCAAGAAGGCCTTGTTTTACCC
CGCCATGGTGATGGCGGTTGCCCTGATCGTTACTTCGATCCTACTGGTCTGGGTCGTTCCGCAGTTTGAGGACGTGTTCA
AGGGCTTCGGTGCGGAGCTACCGGCCTTCACCCAGATGATCGTTGCTGCATCTCGCTTCATGGTGGCTTACTGGTGGATG
CTGTTGCTCTTGTTGATCGGCACCATCGGCGGCTTCATCTTCGCCTACAAACGTTCGCCCGCGATGCAGCATGGGATGGA
CCGACTGGTGCTCAAGGTGCCGATCATCGGCCAGATCATGCACAACAGCTCGGTCGCGCGTTTCTCGCGCACCTTGGCGG
TGACCTTCCGCGCCGGCGTACCGCTGGTGGAAGCGCTGGACATCGTCGCGGGCGCTACCGGCAATAGCGTCTATGAGACT
GCCGTGCTGCGTATGCGCGACGACGTATCGGTCGGCTACCCAGTCAACATGGCGATGAAGCAGACCAACCTGTTTCCCCA
CATGGTCATCCAGATGACCGCGATCGGTGAAGAAGCCGGTGCGCTGGATGCGATGCTGTTCAAGGTGGCCGAGTACTTCG
AACTGGAAGTCAACAATGCGGTCGATGCCTTGAGCAGCCTGATCGAGCCCTTGATCATGGTGTTCATCGGCACCATCGTC
GGCGGCATGGTCATTGGCATGTACCTGCCGATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.293

94.511

0.513
  pilC Acinetobacter baylyi ADP1

52.451

97.375

0.511
  pilC Legionella pneumophila strain ERS1305867

52.475

96.42

0.506
  pilC Acinetobacter baumannii D1279779

51.471

97.375

0.501
  pilG Neisseria gonorrhoeae MS11

44

95.465

0.42
  pilG Neisseria meningitidis 44/76-A

43.5

95.465

0.415
  pilC Vibrio cholerae strain A1552

42.469

96.659

0.41
  pilC Vibrio campbellii strain DS40M4

40.201

94.988

0.382