Detailed information NTG0717988

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: NUG21_RS05735
• Genome accession: NZ_CP102594
• Coordinates: 1335417..1336805 (-)
• Length: 462 a.a.
• NCBI ID: WP_242080579.1
• Uniprot ID: A0AAU8I3Z7
• Organism: Xanthomonas sp. CFBP 8445
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1330417..1341805

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NUG21_RS05715 (NUG21_05715)	pilC	1330931..1332190 (-)	1260	WP_263393035.1	type II secretion system F family protein	Machinery gene
NUG21_RS05720 (NUG21_05720)	pilA/pilAI	1332555..1332974 (+)	420	WP_019799634.1	pilin	Machinery gene
NUG21_RS05725 (NUG21_05725)	-	1333008..1333481 (+)	474	WP_160947579.1	pilin	-
NUG21_RS05730 (NUG21_05730)	pilB	1333522..1335255 (+)	1734	WP_160947580.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NUG21_RS05735 (NUG21_05735)	pilR	1335417..1336805 (-)	1389	WP_242080579.1	sigma-54 dependent transcriptional regulator	Regulator
NUG21_RS05740 (NUG21_05740)	-	1336888..1338501 (-)	1614	WP_263392515.1	ATP-binding protein	-
NUG21_RS05745 (NUG21_05745)	sucC	1338879..1340048 (+)	1170	WP_010342227.1	ADP-forming succinate--CoA ligase subunit beta	-
NUG21_RS05750 (NUG21_05750)	sucD	1340071..1340946 (+)	876	WP_026144653.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 49894.26 Da
• Isoelectric Point: 6.6703

>NTDB_id=717988 NUG21_RS05735 WP_242080579.1 1335417..1336805(-) (pilR) [Xanthomonas sp. CFBP 8445]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAKHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIQVLRGLVKHALELNNESRAAPPQPAPEQASRLLGASAAMDALRSTIAKVAR
NQAPVYILGESGVGKELVARTIHEQGARSAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLPMQVKLLRAIQEKSVRPVGAASEVPVDVRILSATHKDLADLVAEGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAILARLAKSHGRPTPLLSPSALDALSSYAFPGNVRELENILERALAMAEDDQISATDLRLPQPGNHARSAAEAAPA
LPRGVVDIDPSSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1389 bp

>NTDB_id=717988 NUG21_RS05735 WP_242080579.1 1335417..1336805(-) (pilR) [Xanthomonas sp. CFBP 8445]
ATGAACGAAACCCGAAGTGCCCTGGTCGTCGACGACGAGCGCGACATCCGCGAGTTGCTGGTCCTGACCCTGGGCCGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCGCGCGAATTGCTGGCGAGCAACCCCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAGCTGGTCAGCGAGATCGCCAAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCCAGGTGCTGCGCGGCCTGGTCAAGCATGCACTGGAACTCAACAACGAGAGCCGCGCCGCGCCGCCGCAGCCGG
CCCCGGAACAGGCCAGCCGCCTGCTCGGCGCCTCGGCGGCAATGGACGCGCTGCGCAGCACCATCGCCAAGGTCGCGCGC
AACCAGGCGCCGGTCTACATCCTCGGCGAGTCCGGCGTGGGCAAGGAGCTGGTCGCGCGCACCATCCACGAACAGGGCGC
CCGCTCCGCCGGCCCGTTCGTGCCGGTGAACTGCGGCGCGATCCCCGCCGAACTGATGGAAAGTGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCCCATGCCGACCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTCGAC
GAGGTCGCCGAACTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGTGCGCCCGGTCGGCGC
CGCCAGCGAAGTGCCGGTGGACGTGCGGATCCTCTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGAGGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCGCGGCTGGCCAAGAGCCACGGCCGCCCCACCCCGCTGCTGTCGCCCTCGGCGCTGGA
CGCCCTGAGCAGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCCCTGGCGATGGCCGAGG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCGCAACCCGGCAACCACGCCCGCAGCGCCGCCGAGGCCGCCCCGGCG
CTGCCGCGCGGCGTGGTCGACATCGACCCCAGCTCCTCCGCCCTGCCGTCCTACATCGAGCAACTCGAACGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCGCAACTGGGCATCACCTTTCGGGCGCTGCGCT
ACAAGCTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Response regulator receiver domain (Response_reg) (8-115)

• Bacterial regulatory protein, Fis family (HTH_8) (419-459)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.826	99.567	0.626
pilR	Acinetobacter baumannii strain A118	47.084	100	0.472