Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   IL310_RS02770 Genome accession   NZ_CP117409
Coordinates   149176..149448 (-) Length   90 a.a.
NCBI ID   WP_242481509.1    Uniprot ID   -
Organism   Lactococcus lactis strain LB7     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 144176..154448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL310_RS02765 (IL310_02770) - 148525..149175 (-) 651 WP_340641683.1 LacI family DNA-binding transcriptional regulator -
  IL310_RS02770 (IL310_02775) cytR 149176..149448 (-) 273 WP_242481509.1 LacI family DNA-binding transcriptional regulator Regulator
  IL310_RS02775 (IL310_02780) - 149448..150257 (-) 810 WP_033900681.1 Cof-type HAD-IIB family hydrolase -
  IL310_RS02780 (IL310_02785) polA 150494..153127 (+) 2634 WP_201248648.1 DNA polymerase I -
  IL310_RS02785 (IL310_02790) - 153488..154240 (+) 753 WP_058203704.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -

Sequence

Protein


Download         Length: 90 a.a.        Molecular weight: 9758.16 Da        Isoelectric Point: 8.3908

>NTDB_id=717987 IL310_RS02770 WP_242481509.1 149176..149448(-) (cytR) [Lactococcus lactis strain LB7]
MTSLSDLSKLSGYSKATISRALSGNGYVSKETRKIILDLAKELDYTPNAIAQDLSAGTTKNIGVVLPYVKHPFFGQILEG
ILDKSFETGY

Nucleotide


Download         Length: 273 bp        

>NTDB_id=717987 IL310_RS02770 WP_242481509.1 149176..149448(-) (cytR) [Lactococcus lactis strain LB7]
ATGACCTCTTTATCCGATTTATCGAAACTTAGCGGCTATTCAAAAGCTACCATCTCTCGTGCCCTTTCTGGGAATGGCTA
TGTTTCAAAAGAAACACGTAAAATTATTTTGGACTTAGCTAAAGAACTTGACTATACTCCCAATGCAATCGCACAGGATT
TATCGGCTGGTACAACAAAAAATATTGGAGTTGTCCTCCCCTACGTCAAGCATCCGTTTTTTGGGCAAATATTAGAAGGG
ATTCTGGATAAAAGTTTTGAAACTGGCTATTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

38.889

100

0.389
  cytR Vibrio cholerae C6706

37.778

100

0.378