Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   MOP79_RS07135 Genome accession   NZ_CP102583
Coordinates   1394556..1394951 (+) Length   131 a.a.
NCBI ID   WP_000282467.1    Uniprot ID   A0A098Z0L0
Organism   Streptococcus pneumoniae strain D39Mega17545     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1389556..1399951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOP79_RS07090 - 1389883..1391055 (-) 1173 WP_100931674.1 IS256-like element IS256 family transposase -
  MOP79_RS07095 - 1391111..1391740 (+) 630 WP_239424734.1 hypothetical protein -
  MOP79_RS07100 - 1391901..1392092 (+) 192 WP_000291826.1 cell wall-binding protein -
  MOP79_RS07105 - 1392099..1392179 (+) 81 WP_223200442.1 hypothetical protein -
  MOP79_RS07110 - 1392204..1392335 (-) 132 WP_001811306.1 hypothetical protein -
  MOP79_RS07115 - 1392429..1392728 (+) 300 WP_001013974.1 DUF4651 domain-containing protein -
  MOP79_RS07120 - 1392725..1393042 (+) 318 WP_000615767.1 thioredoxin family protein -
  MOP79_RS07125 ytpR 1393058..1393684 (+) 627 WP_000578309.1 YtpR family tRNA-binding protein -
  MOP79_RS07130 - 1393717..1394478 (+) 762 WP_001107755.1 SDR family NAD(P)-dependent oxidoreductase -
  MOP79_RS07135 ssbB/cilA 1394556..1394951 (+) 396 WP_000282467.1 single-stranded DNA-binding protein Machinery gene
  MOP79_RS07140 groES 1395107..1395391 (+) 285 WP_000917304.1 co-chaperone GroES -
  MOP79_RS07145 groL 1395407..1397029 (+) 1623 WP_000031573.1 chaperonin GroEL -
  MOP79_RS07150 - 1397128..1398357 (-) 1230 WP_000436473.1 ISL3 family transposase -
  MOP79_RS07155 - 1398517..1398723 (+) 207 WP_000775827.1 transcriptional regulator -
  MOP79_RS07160 - 1399077..1399610 (-) 534 WP_000775321.1 DUF402 domain-containing protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14925.89 Da        Isoelectric Point: 5.9409

>NTDB_id=717881 MOP79_RS07135 WP_000282467.1 1394556..1394951(+) (ssbB/cilA) [Streptococcus pneumoniae strain D39Mega17545]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=717881 MOP79_RS07135 WP_000282467.1 1394556..1394951(+) (ssbB/cilA) [Streptococcus pneumoniae strain D39Mega17545]
ATGTATAATAAAGTTATCATGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTTAATATGGTTCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGTCAGATGAATTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCTATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098Z0L0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae D39

100

100

1
  ssbB/cilA Streptococcus pneumoniae Rx1

100

100

1
  ssbB/cilA Streptococcus pneumoniae R6

100

100

1
  ssbB/cilA Streptococcus pneumoniae TIGR4

99.237

100

0.992
  ssbB/cilA Streptococcus mitis SK321

98.473

100

0.985
  ssbB/cilA Streptococcus mitis NCTC 12261

98.473

100

0.985
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.229

100

0.702
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405