Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NR756_RS17815 Genome accession   NZ_CP102389
Coordinates   3857838..3859061 (+) Length   407 a.a.
NCBI ID   WP_233917137.1    Uniprot ID   -
Organism   Alloalcanivorax xenomutans strain AX     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3852838..3864061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NR756_RS17800 (NR756_17775) - 3854574..3855041 (+) 468 WP_416391153.1 hypothetical protein -
  NR756_RS17805 (NR756_17780) - 3855223..3855693 (-) 471 WP_233917135.1 pilin -
  NR756_RS17810 (NR756_17785) pilB 3856055..3857767 (+) 1713 WP_233917136.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NR756_RS17815 (NR756_17790) pilC 3857838..3859061 (+) 1224 WP_233917137.1 type II secretion system F family protein Machinery gene
  NR756_RS17820 (NR756_17795) pilD 3859089..3859952 (+) 864 WP_022995250.1 prepilin peptidase Machinery gene
  NR756_RS17825 (NR756_17800) coaE 3860166..3860771 (+) 606 WP_022995249.1 dephospho-CoA kinase -
  NR756_RS17830 (NR756_17805) - 3860761..3860955 (+) 195 WP_022995248.1 DNA gyrase inhibitor YacG -
  NR756_RS17835 (NR756_17810) - 3860956..3861906 (-) 951 WP_416391154.1 Nudix family hydrolase -
  NR756_RS17840 (NR756_17815) argJ 3861909..3863114 (-) 1206 WP_233917138.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 43862.65 Da        Isoelectric Point: 9.7716

>NTDB_id=716786 NR756_RS17815 WP_233917137.1 3857838..3859061(+) (pilC) [Alloalcanivorax xenomutans strain AX]
MAKTAAQQKTATFLYEGLDRKGSKVKGEISGKGPAMVRAELRRQGIQARKVIKKRELSLGGKKKIKPADIALFTRQMATM
MKAGVPLVQSFDIVADGLDNPSMKDVVLKIKTEVEGGNNFAGALRQHPILFDDLYCSLIESGETSGALETMLDRVALYKE
KSEALKAKIRKAVKYPIAVVVVAVVVTAILLVKVVPTFQELFQGFGAELPAFTQFVINLSEGLQSNFVTLLFCTGAVIVG
FIQGRKRSSTFKDAVDRLLLRLPIIGDITHKATVARFARTLSTTFAAGVPLIDALDACAGATGNVVYRKAVLQVKEDVAT
GQQLQFAMRSTGVFPPMALQMTAIGEESGALDGMLGKVATYYEDEVDNLVDGLTSMLEPLIMSVLGVLIGGLIIAMYLPI
FQLGQVV

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=716786 NR756_RS17815 WP_233917137.1 3857838..3859061(+) (pilC) [Alloalcanivorax xenomutans strain AX]
ATGGCTAAGACAGCGGCGCAGCAGAAAACCGCCACTTTTCTCTACGAAGGCCTTGATCGCAAGGGCAGTAAAGTCAAAGG
GGAAATCAGCGGCAAGGGCCCGGCGATGGTGCGCGCGGAATTGCGCCGCCAGGGTATTCAGGCACGCAAGGTGATCAAGA
AACGGGAGCTGTCGCTGGGCGGCAAGAAGAAGATCAAACCCGCCGACATCGCCCTGTTCACCCGCCAGATGGCCACCATG
ATGAAGGCCGGTGTACCGCTGGTGCAATCCTTCGATATCGTTGCCGACGGCCTGGACAATCCATCGATGAAGGACGTGGT
GCTGAAGATCAAGACCGAGGTGGAAGGCGGCAACAACTTTGCTGGAGCTTTACGGCAACATCCCATCCTATTCGACGATC
TTTACTGCAGTCTAATCGAGTCTGGCGAAACTTCAGGTGCCCTGGAAACCATGCTCGACCGAGTCGCGCTCTATAAAGAA
AAGAGCGAGGCTCTAAAGGCCAAAATCCGCAAAGCCGTTAAATATCCCATCGCTGTTGTCGTTGTTGCTGTTGTCGTTAC
GGCCATTCTTCTCGTTAAGGTGGTGCCCACTTTCCAAGAATTGTTCCAAGGTTTTGGGGCGGAATTGCCTGCTTTTACAC
AATTCGTAATCAATCTCTCCGAAGGTCTCCAAAGTAATTTTGTCACTCTCTTATTTTGTACAGGTGCAGTGATTGTTGGG
TTCATTCAAGGTCGAAAGCGCTCCTCAACCTTCAAGGACGCCGTCGATCGTCTCTTGCTGCGCTTGCCAATCATCGGCGA
TATCACCCATAAAGCCACCGTCGCCCGATTCGCCCGCACCCTGTCCACCACCTTCGCCGCCGGGGTGCCTCTGATCGACG
CCCTGGACGCCTGTGCCGGGGCCACCGGCAATGTGGTTTATCGCAAGGCGGTACTGCAGGTCAAAGAAGACGTGGCTACC
GGCCAGCAGCTACAATTCGCCATGCGTTCCACCGGTGTTTTCCCGCCAATGGCCTTGCAGATGACCGCCATTGGCGAGGA
ATCCGGGGCCCTGGACGGTATGCTTGGTAAAGTCGCCACCTACTACGAAGATGAGGTGGATAATCTCGTGGACGGTCTGA
CCAGCATGCTGGAGCCGCTGATCATGTCGGTGCTGGGTGTGCTGATCGGCGGCCTGATCATCGCCATGTATCTGCCGATC
TTCCAACTGGGTCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

65.414

98.034

0.641
  pilC Acinetobacter baylyi ADP1

64.925

98.771

0.641
  pilC Acinetobacter baumannii D1279779

64.925

98.771

0.641
  pilC Legionella pneumophila strain ERS1305867

53.401

97.543

0.521
  pilC Vibrio campbellii strain DS40M4

43.521

100

0.437
  pilG Neisseria gonorrhoeae MS11

44.389

98.526

0.437
  pilG Neisseria meningitidis 44/76-A

44.14

98.526

0.435
  pilC Vibrio cholerae strain A1552

44.472

97.789

0.435
  pilC Thermus thermophilus HB27

37.346

100

0.373