Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   NR756_RS17820 Genome accession   NZ_CP102389
Coordinates   3859089..3859952 (+) Length   287 a.a.
NCBI ID   WP_022995250.1    Uniprot ID   -
Organism   Alloalcanivorax xenomutans strain AX     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3854089..3864952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NR756_RS17800 (NR756_17775) - 3854574..3855041 (+) 468 WP_416391153.1 hypothetical protein -
  NR756_RS17805 (NR756_17780) - 3855223..3855693 (-) 471 WP_233917135.1 pilin -
  NR756_RS17810 (NR756_17785) pilB 3856055..3857767 (+) 1713 WP_233917136.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NR756_RS17815 (NR756_17790) pilC 3857838..3859061 (+) 1224 WP_233917137.1 type II secretion system F family protein Machinery gene
  NR756_RS17820 (NR756_17795) pilD 3859089..3859952 (+) 864 WP_022995250.1 prepilin peptidase Machinery gene
  NR756_RS17825 (NR756_17800) coaE 3860166..3860771 (+) 606 WP_022995249.1 dephospho-CoA kinase -
  NR756_RS17830 (NR756_17805) - 3860761..3860955 (+) 195 WP_022995248.1 DNA gyrase inhibitor YacG -
  NR756_RS17835 (NR756_17810) - 3860956..3861906 (-) 951 WP_416391154.1 Nudix family hydrolase -
  NR756_RS17840 (NR756_17815) argJ 3861909..3863114 (-) 1206 WP_233917138.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31407.47 Da        Isoelectric Point: 7.2176

>NTDB_id=716787 NR756_RS17820 WP_022995250.1 3859089..3859952(+) (pilD) [Alloalcanivorax xenomutans strain AX]
MFSFLADQPALLILFCTVFGLLVGSFLNVVIHRVPRMMERTWRREAQEVLELPIEETSPYNLVVPRSRCPHCDHAIRWHE
NIPVVSWLLLKGRCSACGQGISARYPLVELLSALIAAVCAWQFGYGGWLIFVLFASFTLLALAAIDLDTTLLPDAMTFPL
LWAGLLAALLGISPVALPDAVVGAMAGYLSLWSLYWVFKLVTGKEGMGYGDFKLLAALGAWLGWQYLPLVILLSSVVGLV
FAIGMMARGGLKKGQGIPFGPYLAIAGWIALLWGDTIVGAYLGLFQF

Nucleotide


Download         Length: 864 bp        

>NTDB_id=716787 NR756_RS17820 WP_022995250.1 3859089..3859952(+) (pilD) [Alloalcanivorax xenomutans strain AX]
GTGTTTAGCTTTCTCGCCGACCAGCCCGCACTGCTCATTCTCTTCTGTACCGTGTTCGGGCTACTGGTGGGCAGCTTTCT
CAATGTGGTGATTCACCGCGTTCCGCGAATGATGGAGCGCACCTGGCGGCGCGAAGCCCAGGAAGTGCTGGAACTGCCCA
TCGAGGAAACCAGCCCTTACAACCTGGTGGTGCCCCGTTCCCGCTGCCCGCATTGCGACCACGCCATTCGCTGGCATGAG
AACATCCCGGTGGTCAGTTGGCTGCTGTTGAAGGGACGCTGCAGCGCCTGCGGCCAGGGCATCAGTGCCCGCTATCCCTT
GGTCGAGTTGCTCAGCGCCCTGATCGCCGCTGTTTGCGCCTGGCAGTTTGGCTATGGGGGCTGGCTGATATTCGTGCTGT
TCGCCAGCTTTACCCTGCTGGCATTGGCGGCCATCGATCTGGATACCACGCTGCTCCCTGATGCCATGACCTTCCCGCTG
CTGTGGGCAGGTTTGCTGGCGGCGCTGCTGGGCATCTCGCCGGTTGCCCTGCCGGACGCCGTCGTCGGCGCCATGGCCGG
TTATCTGTCGTTGTGGAGCCTGTACTGGGTATTCAAGCTGGTCACCGGCAAGGAAGGCATGGGCTACGGTGACTTCAAAC
TGCTCGCCGCGCTGGGCGCCTGGCTGGGCTGGCAATATCTGCCGCTGGTGATTCTGTTGTCCTCGGTGGTGGGTCTGGTG
TTCGCCATTGGCATGATGGCTCGTGGTGGCCTCAAAAAGGGTCAGGGCATTCCCTTCGGTCCCTATCTGGCCATTGCCGG
CTGGATCGCGCTGTTATGGGGCGACACCATCGTCGGTGCTTATCTGGGTCTGTTTCAATTCTAG

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(135-243)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

58.781

97.213

0.571
  pilD Vibrio campbellii strain DS40M4

56.159

96.167

0.54
  pilD Acinetobacter nosocomialis M2

48.592

98.955

0.481
  pilD Acinetobacter baumannii D1279779

48.592

98.955

0.481
  pilD Neisseria gonorrhoeae MS11

51.527

91.289

0.47