Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NRZ29_RS02285 Genome accession   NZ_CP102370
Coordinates   496789..498030 (-) Length   413 a.a.
NCBI ID   WP_124251316.1    Uniprot ID   -
Organism   Aeromonas hydrophila strain BC19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 491789..503030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRZ29_RS02255 (NRZ29_02255) - 492630..493814 (+) 1185 WP_268029971.1 tetratricopeptide repeat protein -
  NRZ29_RS02260 (NRZ29_02260) mutT 493823..494236 (+) 414 WP_268029972.1 8-oxo-dGTP diphosphatase MutT -
  NRZ29_RS02265 (NRZ29_02265) yacG 494297..494491 (-) 195 WP_005305661.1 DNA gyrase inhibitor YacG -
  NRZ29_RS02270 (NRZ29_02270) zapD 494501..495223 (-) 723 WP_024945431.1 cell division protein ZapD -
  NRZ29_RS02275 (NRZ29_02275) coaE 495261..495875 (-) 615 WP_268029973.1 dephospho-CoA kinase -
  NRZ29_RS02280 (NRZ29_02280) pilD 495894..496766 (-) 873 WP_268029974.1 prepilin peptidase Machinery gene
  NRZ29_RS02285 (NRZ29_02285) pilC 496789..498030 (-) 1242 WP_124251316.1 type II secretion system F family protein Machinery gene
  NRZ29_RS02290 (NRZ29_02290) pilB 498146..499852 (-) 1707 WP_146061427.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  NRZ29_RS02295 (NRZ29_02295) - 499857..500297 (-) 441 WP_268029975.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  NRZ29_RS02300 (NRZ29_02300) nadC 500620..501477 (-) 858 WP_268013895.1 carboxylating nicotinate-nucleotide diphosphorylase -
  NRZ29_RS02305 (NRZ29_02305) - 501483..501953 (-) 471 WP_024944772.1 TIGR02281 family clan AA aspartic protease -
  NRZ29_RS02310 (NRZ29_02310) ampD 502100..502672 (+) 573 WP_268029976.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45422.58 Da        Isoelectric Point: 9.8637

>NTDB_id=716574 NRZ29_RS02285 WP_124251316.1 496789..498030(-) (pilC) [Aeromonas hydrophila strain BC19]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGAKIKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWWYVIFGGIA
LAIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=716574 NRZ29_RS02285 WP_124251316.1 496789..498030(-) (pilC) [Aeromonas hydrophila strain BC19]
ATGGCAACGCTAACCCAGAAACAAAATGCCCCCAAGAAAGTCTTCGCCTTTCGCTGGAGCGGGGTGAACCGCAAGGGCCA
GAAGGTCTCCGGCGAATTGCAGGCCGACAGCATCAACACGGTCAAGGCAGAGCTGCGCAAACAGGGTGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAACCGATGGACATCGCCGTCGTCTCCCGC
CAGATCACCACCATGCTGTCAGCTGGCGTACCTCTGGTCCAGAGCCTGCAGATCATCGCTCGCAGCCACGAGAAGGCGGC
CATGCGTGAGCTCATGGGCCAGATTGCCGCCGATGTGGAGACCGGCACCCCCATGTCCGAAGCGCTGCGCCGCCATCCCC
GTCACTTTGACGATCTCTACTGCGATCTGGTGGAGGCTGGCGAACAATCCGGCGCTCTGGAGACCATCTACGATCGTATC
GCCACCTATCGCGAGAAATCGGAAGCCCTCAAGTCCAAGATCAAGAAAGCCATGTTCTACCCCACCATGGTCATCCTGGT
GGCCATTGTCGTCACCTCCATCCTGCTGCTGTTTGTCATTCCCCAGTTCGAGGATATCTTCAAGAGTTTCGGCGCCGAGC
TGCCCATCTTCACCCAATTTGTCATCGGCATCTCCCGTTTCATGCAGAACTGGTGGTATGTGATCTTTGGCGGCATAGCA
CTTGCCATCTTTCTCTACGTGCGCGCCTGGCGCGCCTCCCAGAAGGTCAAGGACAACACCGACAAGTTCGTACTGACCAT
CCCCGTGGTCGGCATGATATTGCACAAGGCCGCCATGGCGCGCTTCGCCCGCACCCTCTCCACTACCTTCTCCGCCGGTA
TCCCACTGGTGGATGCACTGATCTCTGCGGCAGGCGCCTCTGGTAACTATGTCTACCGCACTGCCGTCATGGCCATTCGT
AACGAGGTGGTGGCCGGCATGCAGATCAACGTGGCTATGCGCACCGTCGATCTGTTCCCGGACATGGTGATCCAGATGGT
GATGATCGGCGAGGAGTCTGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTAGACGACT
TGGTCGACGGCCTCACCAGCCTGCTGGAGCCTCTCATCATGGTGGTGCTGGGGGTTCTGGTCGGCGGCATGGTGGTCGCC
ATGTATCTGCCCATCTTCAAACTGGGATCGGTGATCCACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

54

96.852

0.523
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

51.358

98.063

0.504
  pilC Vibrio cholerae strain A1552

47.739

96.368

0.46
  pilC Vibrio campbellii strain DS40M4

46.348

96.126

0.446
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

37.75

96.852

0.366