Detailed information NTG0716573

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NRZ29_RS02280
• Genome accession: NZ_CP102370
• Coordinates: 495894..496766 (-)
• Length: 290 a.a.
• NCBI ID: WP_268029974.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila strain BC19
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 490894..501766

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NRZ29_RS02255 (NRZ29_02255)	-	492630..493814 (+)	1185	WP_268029971.1	tetratricopeptide repeat protein	-
NRZ29_RS02260 (NRZ29_02260)	mutT	493823..494236 (+)	414	WP_268029972.1	8-oxo-dGTP diphosphatase MutT	-
NRZ29_RS02265 (NRZ29_02265)	yacG	494297..494491 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
NRZ29_RS02270 (NRZ29_02270)	zapD	494501..495223 (-)	723	WP_024945431.1	cell division protein ZapD	-
NRZ29_RS02275 (NRZ29_02275)	coaE	495261..495875 (-)	615	WP_268029973.1	dephospho-CoA kinase	-
NRZ29_RS02280 (NRZ29_02280)	pilD	495894..496766 (-)	873	WP_268029974.1	prepilin peptidase	Machinery gene
NRZ29_RS02285 (NRZ29_02285)	pilC	496789..498030 (-)	1242	WP_124251316.1	type II secretion system F family protein	Machinery gene
NRZ29_RS02290 (NRZ29_02290)	pilB	498146..499852 (-)	1707	WP_146061427.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
NRZ29_RS02295 (NRZ29_02295)	-	499857..500297 (-)	441	WP_268029975.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
NRZ29_RS02300 (NRZ29_02300)	nadC	500620..501477 (-)	858	WP_268013895.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32540.83 Da
• Isoelectric Point: 6.7409

>NTDB_id=716573 NRZ29_RS02280 WP_268029974.1 495894..496766(-) (pilD) [Aeromonas hydrophila strain BC19]
MLIITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPESQPQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATYPPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLTGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=716573 NRZ29_RS02280 WP_268029974.1 495894..496766(-) (pilD) [Aeromonas hydrophila strain BC19]
ATGTTGATTATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTTCTCTTTTCCCTGATGATCGG
CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCGGAATCACAGCCTCAGCAGGAAGAGCGCTACAACCTGATGGTGCCGCGATCTGCCTGTCCCCATTGCGGCCACGCC
ATCACGGCCATGGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCCATCTC
GGCCCGTTATCCCCTGGTAGAGCTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCCGCAACATACCCACCGGGCTGGGGCT
TACTGGCCGCCCTGCTGCTCACCTGGGTACTGGTGGCACTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGACCAG
CTGACCCTGCCACTGCTGTGGGGCGGTCTGCTGTTCAATCTGACTGGGGGATTTGTACCGCTGGCCGATGCGGTGATCGG
TGCCATGGCTGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAAGCACTGCCCATCGTGTTGCTGCTCTCTTCGCTG
GTTGGCGCTTTCATCGGGATTGGTCTCATTCTGCTGCGCAACCATCATCAGAACAAACCCATCCCCTTCGGCCCCTATCT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.189	98.621	0.603
pilD	Vibrio campbellii strain DS40M4	55.594	98.621	0.548
pilD	Acinetobacter baumannii D1279779	54.225	97.931	0.531
pilD	Acinetobacter nosocomialis M2	54.225	97.931	0.531
pilD	Neisseria gonorrhoeae MS11	49.451	94.138	0.466