Detailed information NTG0716562

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: NRZ32_RS16340
• Genome accession: NZ_CP102368
• Coordinates: 3596732..3597973 (+)
• Length: 413 a.a.
• NCBI ID: WP_268037599.1
• Uniprot ID: -
• Organism: Aeromonas dhakensis strain BC18
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3591732..3602973

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NRZ32_RS16315 (NRZ32_16315)	ampD	3592127..3592699 (-)	573	WP_268037595.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
NRZ32_RS16320 (NRZ32_16320)	-	3592823..3593293 (+)	471	WP_268037596.1	TIGR02281 family clan AA aspartic protease	-
NRZ32_RS16325 (NRZ32_16325)	nadC	3593298..3594155 (+)	858	WP_043171615.1	carboxylating nicotinate-nucleotide diphosphorylase	-
NRZ32_RS16330 (NRZ32_16330)	-	3594477..3594905 (+)	429	WP_268037597.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
NRZ32_RS16335 (NRZ32_16335)	pilB	3594910..3596616 (+)	1707	WP_201892603.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
NRZ32_RS16340 (NRZ32_16340)	pilC	3596732..3597973 (+)	1242	WP_268037599.1	type II secretion system F family protein	Machinery gene
NRZ32_RS16345 (NRZ32_16345)	pilD	3597996..3598868 (+)	873	WP_268037600.1	prepilin peptidase	Machinery gene
NRZ32_RS16350 (NRZ32_16350)	coaE	3598888..3599502 (+)	615	WP_268037601.1	dephospho-CoA kinase	-
NRZ32_RS16355 (NRZ32_16355)	zapD	3599540..3600262 (+)	723	WP_268037602.1	cell division protein ZapD	-
NRZ32_RS16360 (NRZ32_16360)	yacG	3600272..3600466 (+)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
NRZ32_RS16365 (NRZ32_16365)	mutT	3600527..3600940 (-)	414	WP_010635956.1	8-oxo-dGTP diphosphatase MutT	-
NRZ32_RS16370 (NRZ32_16370)	-	3600949..3602127 (-)	1179	WP_268037604.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 413 a.a.
• Molecular weight: 45484.62 Da
• Isoelectric Point: 9.8734

>NTDB_id=716562 NRZ32_RS16340 WP_268037599.1 3596732..3597973(+) (pilC) [Aeromonas dhakensis strain BC18]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGAKIKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTTILLLFVIPQFEDIFKSFGAELPAFTQFVIGISRFMQNWWYMIFGGVA
LAIFLYVRTWRASQKVRDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide

• Length: 1242 bp

>NTDB_id=716562 NRZ32_RS16340 WP_268037599.1 3596732..3597973(+) (pilC) [Aeromonas dhakensis strain BC18]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAAGAAAGTCTTCGCCTTTCGCTGGAGCGGGGTGAACCGCAAGGGCCA
GAAGGTCTCCGGCGAGCTGCAGGCCGACAGCATCAACACGGTCAAGGCCGAGCTGCGCAAGCAGGGCGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAGGGGCTCTTCTCCAAGGGTGGCGCCAAGATAAAGCCGATGGATATTGCCGTCGTCTCCCGA
CAGATCACCACCATGCTGTCGGCCGGCGTACCTCTGGTCCAGAGCCTGCAGATCATCGCCCGCAGCCACGAGAAGGCGGC
CATGCGCGAGCTGATGGGCCAGATAGCCGCCGATGTGGAGACCGGTACCCCCATGTCCGAGGCGCTGCGCCGCCATCCCC
GCCACTTCGATGATCTCTATTGCGACCTGGTCGAGGCGGGCGAGCAGTCCGGCGCCCTGGAGACCATCTACGACCGCATC
GCGACTTATCGCGAAAAGTCCGAAGCGCTCAAATCCAAGATCAAGAAGGCCATGTTCTACCCCACCATGGTCATCCTGGT
CGCCATTGTCGTCACCACTATCCTGCTGCTGTTCGTCATTCCGCAGTTTGAGGACATCTTCAAGAGCTTCGGCGCCGAAC
TGCCCGCCTTTACCCAGTTCGTCATCGGCATCTCCCGCTTCATGCAAAACTGGTGGTATATGATCTTTGGCGGGGTTGCA
CTCGCCATCTTCCTCTACGTGCGAACCTGGCGTGCCTCGCAGAAAGTCAGAGACAACACCGACAAGTTCATTCTGACCAT
CCCGGTGGTCGGCATGATATTGCACAAGGCCGCCATGGCCCGCTTCGCCCGCACCCTCTCCACCACCTTTTCTGCCGGTA
TCCCGCTGGTGGATGCCCTGATCTCCGCCGCAGGCGCCTCCGGCAACTATGTCTATCGCACCGCCGTCATGGCCATTCGC
AACGAGGTGGTGGCCGGCATGCAGATCAACGTAGCCATGCGCACCGTTGATCTGTTCCCCGACATGGTGATCCAGATGGT
GATGATTGGCGAGGAGTCCGGCGCCATCGATGATATGCTCTCCAAGGTCGCTACCATCTTCGAACAAGAGGTGGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAACCTCTCATCATGGTGGTGCTGGGGGTACTGGTCGGCGGCATGGTGGTCGCC
ATGTACCTGCCCATCTTCAAACTGGGGTCGGTCATCCACTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (282-404)

• Type II secretion system (T2SS), protein F (T2SSF) (79-201)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	57.323	95.884	0.55
pilC	Acinetobacter baumannii D1279779	54	96.852	0.523
pilC	Legionella pneumophila strain ERS1305867	51.358	98.063	0.504
pilC	Acinetobacter baylyi ADP1	52.141	96.126	0.501
pilC	Vibrio cholerae strain A1552	47.99	96.368	0.462
pilC	Vibrio campbellii strain DS40M4	47.355	96.126	0.455
pilG	Neisseria meningitidis 44/76-A	40.494	98.063	0.397
pilG	Neisseria gonorrhoeae MS11	40.494	98.063	0.397
pilC	Thermus thermophilus HB27	38	96.852	0.368