Detailed information NTG0716563

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NRZ32_RS16345
• Genome accession: NZ_CP102368
• Coordinates: 3597996..3598868 (+)
• Length: 290 a.a.
• NCBI ID: WP_268037600.1
• Uniprot ID: -
• Organism: Aeromonas dhakensis strain BC18
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3592996..3603868

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NRZ32_RS16325 (NRZ32_16325)	nadC	3593298..3594155 (+)	858	WP_043171615.1	carboxylating nicotinate-nucleotide diphosphorylase	-
NRZ32_RS16330 (NRZ32_16330)	-	3594477..3594905 (+)	429	WP_268037597.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
NRZ32_RS16335 (NRZ32_16335)	pilB	3594910..3596616 (+)	1707	WP_201892603.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
NRZ32_RS16340 (NRZ32_16340)	pilC	3596732..3597973 (+)	1242	WP_268037599.1	type II secretion system F family protein	Machinery gene
NRZ32_RS16345 (NRZ32_16345)	pilD	3597996..3598868 (+)	873	WP_268037600.1	prepilin peptidase	Machinery gene
NRZ32_RS16350 (NRZ32_16350)	coaE	3598888..3599502 (+)	615	WP_268037601.1	dephospho-CoA kinase	-
NRZ32_RS16355 (NRZ32_16355)	zapD	3599540..3600262 (+)	723	WP_268037602.1	cell division protein ZapD	-
NRZ32_RS16360 (NRZ32_16360)	yacG	3600272..3600466 (+)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
NRZ32_RS16365 (NRZ32_16365)	mutT	3600527..3600940 (-)	414	WP_010635956.1	8-oxo-dGTP diphosphatase MutT	-
NRZ32_RS16370 (NRZ32_16370)	-	3600949..3602127 (-)	1179	WP_268037604.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32520.84 Da
• Isoelectric Point: 6.7410

>NTDB_id=716563 NRZ32_RS16345 WP_268037600.1 3597996..3598868(+) (pilD) [Aeromonas dhakensis strain BC18]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLSYFNPETQPQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSQVVAATFPPGWALLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
IGAIIGISLILLRNHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=716563 NRZ32_RS16345 WP_268037600.1 3597996..3598868(+) (pilD) [Aeromonas dhakensis strain BC18]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTTTCGCTGGTATTCCTCTTCTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATACCTCAGCTATTTCA
ATCCAGAGACACAACCGCAGCAGGAGGAACGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCCCATTGCGGCCACGCC
ATCACGGCCATGGAGAATATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGTCGCTGCCGTGAATGTCAGGCCCCCATCTC
GGCCCGTTATCCGCTGGTGGAGCTGCTGACAGCCCTGCTCTCGCAGGTCGTCGCCGCAACATTCCCACCGGGCTGGGCTT
TGCTGGCCGCCCTGCTGCTCACCTGGGTGCTGGTGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAG
CTGACCCTGCCATTGCTGTGGGGCGGCCTGCTGTTCAATCTGGCAGGGGGATTCGTTCCGCTGGCCGATGCGGTGATCGG
TGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTTCTGACCGGCAAGGAAGGGATGGGCTACG
GCGACTTCAAGCTGCTGGCGGCGCTGGGGGCCTGGCTGGGCTGGCAGGCCCTGCCCATCGTGCTGCTGCTCTCCTCGCTG
ATCGGCGCCATCATAGGGATCAGTCTCATCCTGCTGCGCAACCACCATCAGGGCAAACCCATCCCCTTCGGGCCCTACCT
GGCGATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.538	98.621	0.607
pilD	Vibrio campbellii strain DS40M4	57.639	99.31	0.572
pilD	Acinetobacter baumannii D1279779	54.225	97.931	0.531
pilD	Acinetobacter nosocomialis M2	54.225	97.931	0.531
pilD	Neisseria gonorrhoeae MS11	49.451	94.138	0.466