Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NRZ30_RS14980 Genome accession   NZ_CP102367
Coordinates   3240114..3241355 (-) Length   413 a.a.
NCBI ID   WP_215805988.1    Uniprot ID   -
Organism   Aeromonas jandaei strain BC17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3235114..3246355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRZ30_RS14955 (NRZ30_14955) mutT 3237148..3237561 (+) 414 WP_268016470.1 8-oxo-dGTP diphosphatase MutT -
  NRZ30_RS14960 (NRZ30_14960) yacG 3237622..3237816 (-) 195 WP_411913948.1 DNA gyrase inhibitor YacG -
  NRZ30_RS14965 (NRZ30_14965) zapD 3237826..3238548 (-) 723 WP_041210678.1 cell division protein ZapD -
  NRZ30_RS14970 (NRZ30_14970) coaE 3238593..3239201 (-) 609 WP_268016472.1 dephospho-CoA kinase -
  NRZ30_RS14975 (NRZ30_14975) pilD 3239219..3240091 (-) 873 WP_268016473.1 prepilin peptidase Machinery gene
  NRZ30_RS14980 (NRZ30_14980) pilC 3240114..3241355 (-) 1242 WP_215805988.1 type II secretion system F family protein Machinery gene
  NRZ30_RS14985 (NRZ30_14985) pilB 3241501..3243207 (-) 1707 WP_033115377.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  NRZ30_RS14990 (NRZ30_14990) tapA 3243215..3243649 (-) 435 WP_268016474.1 type IVa pilus major pilin TapA -
  NRZ30_RS14995 (NRZ30_14995) nadC 3243972..3244829 (-) 858 WP_268016475.1 carboxylating nicotinate-nucleotide diphosphorylase -
  NRZ30_RS15000 (NRZ30_15000) - 3244833..3245303 (-) 471 WP_033115375.1 TIGR02281 family clan AA aspartic protease -
  NRZ30_RS15005 (NRZ30_15005) ampD 3245426..3245995 (+) 570 WP_268016476.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45396.53 Da        Isoelectric Point: 9.6148

>NTDB_id=716534 NRZ30_RS14980 WP_215805988.1 3240114..3241355(-) (pilC) [Aeromonas jandaei strain BC17]
MATLTKKTNAPKKVFAFRWQGVNRKGQKVSGELQAENIATVKAELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGEIAADVETGTPMSEALRRHPLYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFNSFGAELPAFTQFVIGISRFMQNWWYVFFGGIA
LAIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=716534 NRZ30_RS14980 WP_215805988.1 3240114..3241355(-) (pilC) [Aeromonas jandaei strain BC17]
ATGGCAACGCTGACCAAGAAAACCAATGCCCCGAAAAAAGTCTTCGCCTTTCGCTGGCAAGGGGTAAACCGCAAAGGACA
AAAAGTCTCTGGCGAGCTTCAGGCCGAGAACATAGCCACAGTGAAGGCAGAGCTGCGCAAGCAGGGTGTCAATGTCACCA
AGGTTGCCAAGAAGAGTCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAACCGATGGATATTGCCATCGTATCGCGC
CAGATCACTACCATGCTCTCCGCCGGTGTTCCTCTGGTACAAAGCTTGCAAATTATCGCCCGCAGCCACGAAAAAGCATC
CATGCGCGAACTGATGGGAGAAATAGCCGCTGATGTGGAAACCGGCACCCCCATGTCGGAAGCGCTGCGCCGTCATCCGC
TCTACTTTGACGATCTCTACTGCGATCTGGTGGAAGCTGGCGAGCAGTCCGGCGCACTGGAAACCATCTATGACCGCATC
GCCACCTACCGCGAGAAATCAGAAGCTCTCAAGTCGAAGATCAAAAAGGCGATGTTCTACCCAACCATGGTTATCCTGGT
TGCGATTGTCGTTACCTCCATACTGTTGCTCTTCGTCATCCCGCAATTCGAAGATATCTTCAATAGCTTCGGTGCCGAGC
TGCCTGCCTTTACGCAGTTTGTTATCGGCATCTCCCGCTTTATGCAGAACTGGTGGTACGTTTTCTTCGGCGGAATCGCG
CTGGCCATCTTTCTCTATGTCCGTGCCTGGCGAGCCTCCCAGAAGGTAAAAGACAATACCGACAAGTTTGTTCTCACGAT
TCCGGTAGTCGGGATGATCCTGCATAAAGCCGCCATGGCCCGCTTCGCCCGCACCCTCTCCACCACCTTCTCGGCGGGGA
TTCCACTGGTCGATGCCTTGGTTTCAGCTGCTGGTGCCTCCGGTAACTACGTCTATCGCACCGCCGTGATGGCCATTCGC
AACGAGGTCGTCGCCGGTATGCAGATTAACGTGGCGATGCGGACTGTCGATCTCTTCCCCGACATGGTGATTCAGATGGT
GATGATCGGCGAGGAGTCCGGCGCCATCGATGATATGCTCTCCAAGGTCGCTACCATCTTTGAACAGGAGGTAGACGACC
TGGTCGATGGCCTCACCAGCCTGCTGGAACCTCTTATCATGGTGGTACTGGGGGTGCTGGTTGGCGGTATGGTGGTTGCC
ATGTATCTGCCCATCTTTAAACTGGGGTCAGTTATCCACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.828

95.884

0.554
  pilC Acinetobacter baumannii D1279779

54.5

96.852

0.528
  pilC Acinetobacter baylyi ADP1

53.401

96.126

0.513
  pilC Legionella pneumophila strain ERS1305867

51.733

97.821

0.506
  pilC Vibrio campbellii strain DS40M4

46.437

98.547

0.458
  pilC Vibrio cholerae strain A1552

46.734

96.368

0.45
  pilG Neisseria meningitidis 44/76-A

40.741

98.063

0.4
  pilG Neisseria gonorrhoeae MS11

40.741

98.063

0.4
  pilC Thermus thermophilus HB27

38

96.852

0.368