NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	NRZ30_RS14975	Genome accession	NZ_CP102367
Coordinates	3239219..3240091 (-)	Length	290 a.a.
NCBI ID	WP_268016473.1	Uniprot ID	-
Organism	Aeromonas jandaei strain BC17
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3234219..3245091

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NRZ30_RS14950 (NRZ30_14950)	secA	3234353..3237073 (+)	2721	WP_268016469.1	preprotein translocase subunit SecA	-
NRZ30_RS14955 (NRZ30_14955)	mutT	3237148..3237561 (+)	414	WP_268016470.1	8-oxo-dGTP diphosphatase MutT	-
NRZ30_RS14960 (NRZ30_14960)	yacG	3237622..3237816 (-)	195	WP_411913948.1	DNA gyrase inhibitor YacG	-
NRZ30_RS14965 (NRZ30_14965)	zapD	3237826..3238548 (-)	723	WP_041210678.1	cell division protein ZapD	-
NRZ30_RS14970 (NRZ30_14970)	coaE	3238593..3239201 (-)	609	WP_268016472.1	dephospho-CoA kinase	-
NRZ30_RS14975 (NRZ30_14975)	pilD	3239219..3240091 (-)	873	WP_268016473.1	prepilin peptidase	Machinery gene
NRZ30_RS14980 (NRZ30_14980)	pilC	3240114..3241355 (-)	1242	WP_215805988.1	type II secretion system F family protein	Machinery gene
NRZ30_RS14985 (NRZ30_14985)	pilB	3241501..3243207 (-)	1707	WP_033115377.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
NRZ30_RS14990 (NRZ30_14990)	tapA	3243215..3243649 (-)	435	WP_268016474.1	type IVa pilus major pilin TapA	-
NRZ30_RS14995 (NRZ30_14995)	nadC	3243972..3244829 (-)	858	WP_268016475.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

Download Length: 290 a.a. Molecular weight: 32234.48 Da Isoelectric Point: 6.4817

                                >NTDB_id=716533 NRZ30_RS14975 WP_268016473.1 3239219..3240091(-) (pilD) [Aeromonas jandaei strain BC17]

MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRGYFTPEEEQAPEPRYNLMVPRSACPHCGHA

ITALENIPMLSWLWLKGRCSECQAPISARYPLVELLTALLSVAVAMVISPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ

LTLPLLWGGLLFNLSGGFAPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL

VGAIIGISLIALRKHHQGNPIPFGPYLAIAGWIALLWGDTITRWYLTTIL

Nucleotide

Download Length: 873 bp

                                >NTDB_id=716533 NRZ30_RS14975 WP_268016473.1 3239219..3240091(-) (pilD) [Aeromonas jandaei strain BC17]

ATGTTGTTGATCACTGATGTTTTCCATAGCCTCCCCTGGCTCTACTTCTCGCTGGTTTTTCTCTTCTCCCTGATGATCGG

CAGCTTTCTCAACGTGGTGATCCATCGGTTGCCCATTATGTTGGAACGAGAATGGCAGGCTGAATATCGAGGCTACTTCA

CCCCCGAGGAAGAGCAAGCACCCGAACCGCGCTACAACCTGATGGTACCCCGCTCGGCCTGCCCCCATTGCGGCCATGCC

ATCACAGCACTGGAAAATATCCCGATGTTGAGCTGGCTCTGGCTCAAAGGACGCTGCAGTGAGTGCCAAGCCCCTATTTC

GGCCCGCTATCCGCTGGTTGAACTGCTGACAGCCCTGCTCTCGGTGGCAGTAGCCATGGTGATTTCACCGGGTTGGGGTA

CCCTTGCCGCCCTGCTGCTGACCTGGGTATTGGTGGCCCTCACCTTTATCGATCTCGACAAGATGTTGCTGCCAGACCAG

CTGACCCTACCGCTGCTGTGGGGCGGTTTGCTGTTCAACCTGAGCGGTGGTTTTGCACCGCTTGCTGATGCTGTGATCGG

TGCCATGGCTGGCTATCTGGTGCTCTGGAGTCTCTACTGGGCTTTTAAACTGCTGACCGGCAAGGAAGGGATGGGCTATG

GCGACTTCAAGTTGCTGGCGGCACTGGGGGCTTGGCTCGGCTGGCAGGCACTGCCGATCATACTGCTGCTCTCATCCCTG

GTTGGTGCCATCATCGGCATCTCGCTCATTGCCCTGCGCAAACACCATCAGGGTAACCCCATTCCCTTTGGCCCCTACCT

CGCCATCGCGGGCTGGATTGCGCTGCTATGGGGCGATACCATCACTCGCTGGTATCTCACCACCATCCTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	61.672	98.966	0.61
pilD	Vibrio campbellii strain DS40M4	56.794	98.966	0.562
pilD	Acinetobacter baumannii D1279779	53.521	97.931	0.524
pilD	Acinetobacter nosocomialis M2	53.169	97.931	0.521
pilD	Neisseria gonorrhoeae MS11	48.718	94.138	0.459

Detailed information NTG0716533